Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2814 ATGGAAGCTAGAGAAGGCATTAGTTCCGGGGTTACGGTGATAGGGGCAGAAGCTCCATCAGCATATCATGTGGCACCAAGGAGTGAAGCTCCAAACCAGGTTCATGTGCCTGAGGGAGGCACGGCAGCTGTGGCTGCGGCTGCTGCTGCCGCTGCCGGGGTTTCTCCGGTGAGTGTGGGGATAGATGGATCGATGCTTAAGAAGAAACGGGGTAGACCGAGGAAATATGGGCCGGATGGATCTGTCACTATGGCATTGTCACCATTGCCACTCTCATCTTCAGGTCCACATTCAAATGACTTTTCGTCCGGTAAACGGGGGAAATCTAAGGGGACGGAGTACAAGCAGTCGAAAAAACTTGGGTTTGATCAACTAGGTGAATATAATGCATGTGCTGATGGTACAAACTTTCTGCCACATATCATCACTGTTAATGCTGGAGAGGACATTACCATGAAGGTTATATCGTTTTCTCAGCAAGGACCGCGGGCTATATGCATCTTATCTGCTAGTGGTGTAATTTCGAATGTCACTCTTCGTCAACCTGATTCTTCTGGCGGCACTTTGACCTATGAGGGCCGTTTCGATATACTTTCTTTGTCGGGATCGTTCATGCCTACTGACAACCAAGGAACACGAAGCAGGACGGGTGGGATGAGTGTCTCGTTGGCAAGCCCTGATGGTCGTGTTGTAGGTGGTGGTGTTGCCGGACTTCTAGTAGCCGCTAGTCCGGTGCAGGTGGTGGTGGGAAGTTTCCTGCCAAGCAACCAACAAGATCAGAAACCAAAGAAGCCAAAGCCAACTGATTATTCCACGCCCGTTGTTACTCCGGTTGTTACTCCGGCAGTCATCTCGATGTCTTCTGCACCAAGTCACCCGAGCAATGCTGAGAAAGATGATCATGTGATGGGTGGTGCACACCATGTGATGCAAAACTCATCATCAAACCTTACCCCTTCTCCCTTCAGAAGAGAAAATTGGGTGAACATGCATTCCATGCAACAAGACTCGAGAAAGTCGGCTACCGACATCAACATATCTTTGCCAGATAGTTAA 1056 0.4943 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPEGGTAAVAAAAAAAAGVSPVSVGIDGSMLKKKRGRPRKYGPDGSVTMALSPLPLSSSGPHSNDFSSGKRGKSKGTEYKQSKKLGFDQLGEYNACADGTNFLPHIITVNAGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFDILSLSGSFMPTDNQGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSNQQDQKPKKPKPTDYSTPVVTPVVTPAVISMSSAPSHPSNAEKDDHVMGGAHHVMQNSSSNLTPSPFRRENWVNMHSMQQDSRKSATDINISLPDS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2814 351 MobiDBLite consensus disorder prediction 86 102 - -
Amo12g2814 351 MobiDBLite consensus disorder prediction 253 274 - -
Amo12g2814 351 MobiDBLite consensus disorder prediction 332 351 - -
Amo12g2814 351 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 350 - -
Amo12g2814 351 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 255 - -
Amo12g2814 351 Gene3D - 139 267 - -
Amo12g2814 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 350 IPR039605 GO:0003680
Amo12g2814 351 Pfam Plants and Prokaryotes Conserved (PCC) domain 139 252 IPR005175 -
Amo12g2814 351 MobiDBLite consensus disorder prediction 65 113 - -
Amo12g2814 351 ProSiteProfiles PPC domain profile profile. 134 276 IPR005175 -
Amo12g2814 351 CDD DUF296 139 229 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2814 Amo-Chr12 114322264 114326769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2814 6 348 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 52.304 3.32e-102 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2814 - - gmx:100793726 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2182 04 92330829 92334622 Amo12g2814 12 114322264 114326769 PCT
Amo12g2814 12 114322264 114326769 Amo04g2182 04 92330829 92334622 PCT