Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2788 ATGCACTCTACATTGATCCGCCTAAAATCTGAGTTATCGAAAAGTACACATGGCAAGAAGGTGGATGAAGGAAGGTTGTTAACTCTGTGCAATATTTTGCTGGGTGTCGCTGAAGATGCAGAGGTGAAACTGGACAATGAAGATTCGAGGTCGATGATTGAAGAAGTTAAGGACAAATGCTATGACGTGATGGACCTATTGGAAGAAGTGAAGGTGGCACGAGTTGAGGGGCTTTGTTTTTGTAATCCAGTCCCGCCAAGTCGTCGGAGGTTGGAACGCATGATCGAGGAACTTGAACTGTTCGACCCATTCAGAAACAACAACTCCTCTGAGGATATTCGAGTCATTTCCATTGTAGGCGCTCCTGGAATAGGAAAGACTGCAGTGGCCAATTATGCTTTTCAACTTCCATTAGTGCGGGATCATTTCGAAATCCGTGCATGGATATCTGAATCCGAGGATTTTAATCTGATAAAATTTCTCAAAGTCTTCATTGAGATTTTCACTAATGACGTGGTGTATAACGTTGAGACTGAAGTATTACAACTGAGATTTCGCCAAATCGTTGAGAAGAAAAGATGCCTTGTTGTGCTGGACGACGTCAGTCAGGAAAACCCTCAGCATTGGTTACATCTAAAGAAGCTCTTCAAGTTTTGTGATCCAGGAAGTAGGATCTTGATAACCACAAGGAACCAGGAAGTCGCGCACAACGCCGGCTCCTTGTCAACAGACATCATCGAACTAGGTGGTCTTTCTGAAGAAGCTTGCTGGTTAATTTTCAAGGATTATGCATGGGTTACTTCAGAAGCTAAAATCCCGAATGAATTTAGGAGCAACATTATAAATATGTGTAATGGGTCACCATACATCGCCAAGTCTCTTGGTGCAGTCATGCGCAGCAGTGGACCCGTGGAAGAATGGCCAGAACCAGAAGCACTGAAAAAATCAAAAATAGATGATAATGGTAACTTCAAGTTCAGATTGGAGGGCCGGATGGGAGACTTTCTCAAATCCCATGTAGGAGGCGAATACCAAAGCAGGTTCCTTGGTTATTATGAGAAGGAGCCTACCGAGGAGGGTCTCATCACGCGGCATTATACCTTAAATGTTGGAGTTCAAGCTTCTTTGCCAGAGTCCATTCCAAGGGCAGAGAAACTCCACACTTTGATGATTTTGTCCGATCAGTATTCCTTTCCAGATCCAATAAACACTGCTAATCTACTACGCCGTACCAAAAGGCTCAGGGCGCTACACTTGAGCTCATGTTCCATAAAAGAGCTTCCCCCAAACATAGCTCAGTTGCTTCATCTAAGGTACCTTGACTTATCCTTCAATCATGATTTAAAGAAATTGCCTAAAGCAATATGTAGTTTGCTTCACTTGCAAACTCTAAATCTTAATGGATGTGATAGTCTTCAAAAGTTACCTAAAGACATTGGGAAATTAGTGAACCTACTATATCTTGAGATTCTTTGGACAACAGGTCTTAGCTACTTACCCAAGGGGATTGCGACTTTAACCATGCTCAGAAGATTGAATCGTTTCTTTGGCAATTCTAGTGCTAATAATAGCAAAGCTTGCAATCTTGGAGATTTGGAGAATCTAAACAAGATTAGAGGGCATATTACCATAGATGGGTTGGGTGCTGAAGCTGATGTCTCTGGTGCTAAAAAAGCAAGTCTGAAGAACAAGAAAGATTTGCTTGGCTTGGAACTCTGGTTTTCTTTTGTTGGACCGGAGCAAAAAGATGAAGCTGTGCTTGAAGCTTTGGAAGCGCCTCCTGGATTGCAAGGCCTTGGGATATTTTACTACCAAGGCGAATCATTCCCCAATTGGATGACAGCATTGCAGAATCTGACACATGTGATGCTAGCTGATTGTAGTAACTGCAGTGATCTGCCTCCTCTTGGAAAACTGTTAGCACTTCAATCGCTTACCATAAAGAATATGTCCAAAGTGAACATGGTTGGTTCTGGATTTCTTGGAATTCAGTTGAACAATGCTGCTGCTGGTGCTGAAAGCTCCGGTTCCTCATCATCCCAGGCATTTCCAAAATTGCAAGAACTTTGCTTTGAAAAGCTGAATAACTGGGAAAACTGGATTGGAATAGGTGATGACGGCGATTGCGCAAAGGTCATCATGCCTTCGCTTTCTTCTTTGTCAATTATAAACTGCTCAAAACTAAGGACAATTCCAAACTACATAAAGCTGAAGACAAATTTGAGCGGTGGCATTGAAAGATGTCCTTCTCTTGATTTATCACAGGATCAGTTATCAAGAATCTTTCAAGGGACTACAACCACAGATAAAGTGAGGTCTAGTTGA 2325 0.4232 MHSTLIRLKSELSKSTHGKKVDEGRLLTLCNILLGVAEDAEVKLDNEDSRSMIEEVKDKCYDVMDLLEEVKVARVEGLCFCNPVPPSRRRLERMIEELELFDPFRNNNSSEDIRVISIVGAPGIGKTAVANYAFQLPLVRDHFEIRAWISESEDFNLIKFLKVFIEIFTNDVVYNVETEVLQLRFRQIVEKKRCLVVLDDVSQENPQHWLHLKKLFKFCDPGSRILITTRNQEVAHNAGSLSTDIIELGGLSEEACWLIFKDYAWVTSEAKIPNEFRSNIINMCNGSPYIAKSLGAVMRSSGPVEEWPEPEALKKSKIDDNGNFKFRLEGRMGDFLKSHVGGEYQSRFLGYYEKEPTEEGLITRHYTLNVGVQASLPESIPRAEKLHTLMILSDQYSFPDPINTANLLRRTKRLRALHLSSCSIKELPPNIAQLLHLRYLDLSFNHDLKKLPKAICSLLHLQTLNLNGCDSLQKLPKDIGKLVNLLYLEILWTTGLSYLPKGIATLTMLRRLNRFFGNSSANNSKACNLGDLENLNKIRGHITIDGLGAEADVSGAKKASLKNKKDLLGLELWFSFVGPEQKDEAVLEALEAPPGLQGLGIFYYQGESFPNWMTALQNLTHVMLADCSNCSDLPPLGKLLALQSLTIKNMSKVNMVGSGFLGIQLNNAAAGAESSGSSSSQAFPKLQELCFEKLNNWENWIGIGDDGDCAKVIMPSLSSLSIINCSKLRTIPNYIKLKTNLSGGIERCPSLDLSQDQLSRIFQGTTTTDKVRSS* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2788 774 PRINTS Disease resistance protein signature 115 130 - -
Amo12g2788 774 PRINTS Disease resistance protein signature 188 202 - -
Amo12g2788 774 PRINTS Disease resistance protein signature 432 448 - -
Amo12g2788 774 PRINTS Disease resistance protein signature 284 298 - -
Amo12g2788 774 PANTHER DISEASE RESISTANCE PROTEIN RP 50 313 IPR044974 GO:0006952
Amo12g2788 774 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 318 IPR027417 -
Amo12g2788 774 Pfam Leucine rich repeat 413 470 IPR001611 GO:0005515
Amo12g2788 774 PANTHER DISEASE RESISTANCE PROTEIN RP 383 735 IPR044974 GO:0006952
Amo12g2788 774 SUPERFAMILY L domain-like 386 742 - -
Amo12g2788 774 Pfam NB-ARC domain 110 309 IPR002182 GO:0043531
Amo12g2788 774 Gene3D Ribonuclease Inhibitor 369 773 IPR032675 -
Amo12g2788 774 PANTHER OS05G0414200 PROTEIN 383 735 - -
Amo12g2788 774 PANTHER OS05G0414200 PROTEIN 50 313 - -
Amo12g2788 774 Gene3D - 75 245 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2788 Amo-Chr12 113848752 113851901 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2788 378 528 WRKY Transcription Factor Family AT4G12020 32.450 2.52e-11 65.9