Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2771 ATGCATGACAATGGGGTCAATTTGGACAAGTACTCGTTTTCACTTGCTCTCAAGGCTTGTTCCCAAGTAGGTTTGTTGAAGGAAGCAATGCAAGTTTATGGGTTGTTGTCAAAAACGTATCTTTGTTCTGATGTGTTCTTGCAAAATTGCTTGGTTGGATTGTTTGTGAAGTGTGGCTGTGTTGAGCTTGCGCGCCAAGTGTTTGATAGAATGTCTGAACGAGACGCTGTTTCTTATAACTCCATGATTGATGGGTATGTGAAGTGTGGGGCGGTTGAAAAGGCACGTGAGTTGTTTGATGGAATGCTATTAGATGAGAGGAACCTGATTACTTGGAATTCAATGATTGGAGGATATGTAAGGTGCGGGGATGGGTTGGATATTGCTTGGAGTATGTTTGATGAAATGCCTGAGAAAGACTTGGTTTCATGGAACACTATGATTGGTGGGTGCGTGAAGCATGCGAAAATGGAGGATGCTCAAGCATTGTTTGATGAGATGCCTGAGAGAGATTCCGTCAGTTGGGTTACTATGATCGATGGTTATGCGAAATCGGGTAATGTTGCTGCTGCAAGGAGCTTGTTTGATGAGATGCCAAGTAAAGGTGTTATTTCTTGTAACTCCATGATGGCTGGCTATGTTCAGAACGGTTATTGCATTGAGGCTTTGAAGCTGTTTCATGATATGAGAAGGGCAACAAACATGTTACCTGATGATACCACTTTGTTAATTGTTCTTACAGCAATTGCACAGTCAGGGCAAGTTGAATTTGGTATTGCAATACACCGGTATGTAATAGACAACGGGCACTCTCTAATTGGTAAACTCGGCGTTGCGCTAATTGACATGTACTCAAAGTGTGGCAGCATAGAGGAAGCTATCTCAGTATTTGAGAACATTGAAAGAAAATGCGTAGATCACTGGAATGCTTTGATTGGTGGGTTTGCGATACATGGAATGGGCGAAATGGCATTCGAGTTTTTCATGGAGATGGAAAGGCTTTCTATTACACCCGACAGTATCACATTCATCGGATTGTTGAGTGCTTGTGGACATGCTGGCATGTTGAAGGAAGGACTAATATGTTTTGAGCTTATGCAGAAAGTGTATAATCTTGAACCTAGAGTGCAACACTATGGATGTATAGTTGACATGTTTAGCCGTGCAGGGAAAGTTGAACAAGCGAAGCAATTCATTGAGATGATGCCAATTGAACCAAATGATGTAATTTGGAAGACTTTGATCAGTGCTTGTCAAAATCATCAGAATTTCTCAATAGGTGAGCCTGTAGCTAAGCAATTGGTTCAGCTAAGTTCATGTACTCCAAGTTATGTGCTTTTATCTAATATTTATGCAAGTTTGGGCATGTGGGAAAATGTTAAAAGGGTTAGGACAGAGATGAAAGAAAAGAATTTGATAAAGGTTCCTGGTTGTAGTTGGATTGAACTAGAGGGATGTGTTCACCAGTTTTCTGTACATGATAGGACACACCATCAGTCGCTGAGAGCACACACAGAGAGTAAAGAGTTCTCTTCCTTCCACCAGCCACCATGGGGCGTATGCACAGTCGCGGCTCTTCCTTACAAGAGGACTCCACCCAGCTGGCTCAAGATCTCATCTCAGGATGTTGAGGAGAATATCTGCAAGTTTGCCAAGAAAGGTCTTACTCCATCACAAATTGGTGTTATTCTTCGTGATTCTCACGGAATTGCTCAGGTGAAGAGTGTCACCGGAAGCAAGATTTTGCGTATATTGAAGGCCCATGGTCTTGCTCCTGAAATACCTGAAGATCTATACCACTTGATCAAGAAGGCTGTCTCAATCAGGAAGCACTTGGAGAGGAATAGGAAGGACAAGGACTCTAAATTCAGGTTGATTTTGGTAGAGAGCAGGATCCACCGACTTGCACGTTACTACAAGAAGACCAAGAAGCTTCCACCCGTATGGAAATATGAATCAACAACCGCCAGCACCCTTGTGGCTTAG 1986 0.4265 MHDNGVNLDKYSFSLALKACSQVGLLKEAMQVYGLLSKTYLCSDVFLQNCLVGLFVKCGCVELARQVFDRMSERDAVSYNSMIDGYVKCGAVEKARELFDGMLLDERNLITWNSMIGGYVRCGDGLDIAWSMFDEMPEKDLVSWNTMIGGCVKHAKMEDAQALFDEMPERDSVSWVTMIDGYAKSGNVAAARSLFDEMPSKGVISCNSMMAGYVQNGYCIEALKLFHDMRRATNMLPDDTTLLIVLTAIAQSGQVEFGIAIHRYVIDNGHSLIGKLGVALIDMYSKCGSIEEAISVFENIERKCVDHWNALIGGFAIHGMGEMAFEFFMEMERLSITPDSITFIGLLSACGHAGMLKEGLICFELMQKVYNLEPRVQHYGCIVDMFSRAGKVEQAKQFIEMMPIEPNDVIWKTLISACQNHQNFSIGEPVAKQLVQLSSCTPSYVLLSNIYASLGMWENVKRVRTEMKEKNLIKVPGCSWIELEGCVHQFSVHDRTHHQSLRAHTESKEFSSFHQPPWGVCTVAALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2771 661 SMART Ribosomal_S13_N_2 502 570 IPR012606 GO:0003735|GO:0005840|GO:0006412
Amo12g2771 661 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Amo12g2771 661 Pfam PPR repeat family 304 350 IPR002885 -
Amo12g2771 661 Pfam PPR repeat family 202 249 IPR002885 -
Amo12g2771 661 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 57 - -
Amo12g2771 661 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 59 123 - -
Amo12g2771 661 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 126 495 - -
Amo12g2771 661 CDD Ribosomal_S15p_S13e 580 653 IPR000589 GO:0003735|GO:0005840|GO:0006412
Amo12g2771 661 Pfam Ribosomal S13/S15 N-terminal domain 525 570 IPR012606 GO:0003735|GO:0005840|GO:0006412
Amo12g2771 661 SUPERFAMILY S15/NS1 RNA-binding domain 576 652 IPR009068 -
Amo12g2771 661 Gene3D Tetratricopeptide repeat domain 278 528 IPR011990 GO:0005515
Amo12g2771 661 Gene3D Tetratricopeptide repeat domain 1 105 IPR011990 GO:0005515
Amo12g2771 661 Pfam E motif 421 482 IPR046848 -
Amo12g2771 661 Hamap 30S ribosomal protein S15 [rpsO]. 502 659 IPR023029 -
Amo12g2771 661 Pfam Ribosomal protein S15 584 653 IPR000589 GO:0003735|GO:0005840|GO:0006412
Amo12g2771 661 ProSitePatterns Ribosomal protein S15 signature. 608 638 IPR000589 GO:0003735|GO:0005840|GO:0006412
Amo12g2771 661 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Amo12g2771 661 Gene3D - 593 661 - -
Amo12g2771 661 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 143 IPR002885 -
Amo12g2771 661 TIGRFAM PPR: pentatricopeptide repeat domain 77 103 IPR002885 -
Amo12g2771 661 TIGRFAM PPR: pentatricopeptide repeat domain 173 203 IPR002885 -
Amo12g2771 661 TIGRFAM PPR: pentatricopeptide repeat domain 142 171 IPR002885 -
Amo12g2771 661 TIGRFAM PPR: pentatricopeptide repeat domain 49 75 IPR002885 -
Amo12g2771 661 TIGRFAM PPR: pentatricopeptide repeat domain 204 238 IPR002885 -
Amo12g2771 661 TIGRFAM PPR: pentatricopeptide repeat domain 110 142 IPR002885 -
Amo12g2771 661 TIGRFAM PPR: pentatricopeptide repeat domain 308 339 IPR002885 -
Amo12g2771 661 Pfam PPR repeat 77 103 IPR002885 -
Amo12g2771 661 Pfam PPR repeat 110 140 IPR002885 -
Amo12g2771 661 Pfam PPR repeat 279 303 IPR002885 -
Amo12g2771 661 Pfam PPR repeat 49 74 IPR002885 -
Amo12g2771 661 Pfam PPR repeat 142 170 IPR002885 -
Amo12g2771 661 Pfam PPR repeat 379 402 IPR002885 -
Amo12g2771 661 Gene3D Tetratricopeptide repeat domain 171 276 IPR011990 GO:0005515
Amo12g2771 661 SMART Ribosomal_S15_2 580 659 IPR000589 GO:0003735|GO:0005840|GO:0006412
Amo12g2771 661 Gene3D - 545 592 - -
Amo12g2771 661 Gene3D Tetratricopeptide repeat domain 106 170 IPR011990 GO:0005515
Amo12g2771 661 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 105 IPR002885 -
Amo12g2771 661 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 57 - -
Amo12g2771 661 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 126 495 - -
Amo12g2771 661 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 59 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2771 Amo-Chr12 113538126 113543819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2771 522 661 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 92.143 2.46e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2771 - - gmx:100788616 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2771 12 113538126 113543819 Amo12g2771 12 113538126 113543819 ECH