Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2739 ATGACCAAGTATACTTTCGATTTACTGAAAGTAGCAGTGCTAACATTATGTGCTACTTCTTATGTGTTGTTCCCTGCTATGGCTTCCACCAATGAGGAACGTTATTCTTTGGTGAAGAGTGGTTGGTGGGGAAGTGATTATCAGAAGATCTCAAACCATTGTAATTGGACTGCAATCACATGTAATGAAGCTGGAAGTGTTACAGACATTGCTGCACACTACTGGCCTTTCAACCTTCCTCCATCATCATTGAAACTTCAGAACTTGAATCTCACTGCATTTTCCAATTTAGTCACTCTGTATCTACCTCGAATGCAACTCACCGGAATCATCCCTCCCGAGATAGGTACTCTTTCGAAACTTGTCACTCTTGATCTGTCTTATAATAATCTTCATGGTGAGCTTCCAAAATCATTTGCAAGTCTTACTCAACTCATAGTTCTTGATGTTTCCTTCAATTCTCTTTGTGGAACCATTCCTTCTGAGTTGGGTGAATTCGAGAATCTAACCTTTCTTTCGCTTGCTTCAAACCGAATCGAAGGTCCAATACCACAACAGTTAGGGAATTTAAGAGACTTACAAGAACTACATCTCTCAAATAATTTGATCAATGGTACAATCCCTTCTAGTTTAGGCCGATTGGGAAACTTGACTTCTCTCTCACTTGCTTCAAACCAAATCGAAGGTCACATACCTCAAAATCTTGGGAATTTAAAGAGTTTACGAAAACTCTCTCTCTCAAATAATAAACTCTCAGGTTCAATCCCTTTAACTCTATATCAATTGGGAAATTTATCTTATTTCTACCTTGATTCAAACCAAATAGAAGGACAAATACCACCAGAGATAGGGAGTTTAGAAGCACTAGAAGTATTAAATCTTTCATGTAACTCTTTTTTTGGTCCAATTCCTTCTCAAGTCGGAGCTTTAATTTTCTTACACGAGTTATATATAGAATTCAATCAAATAAATAGTTCTATACCTTCTGAATTTCAGAATTTGGTTAGCCTAACTACCTTGTATCTTTCTCACAATAAGATATCTGGTGTTATACCATCTGAACTGTTCAAGTTACCCTTGTCTTCTCTGCATCTTTCAACCAATCAATTAGTTGGGCATATACCATTTGAGATGAGGAATTCCATTAGGCTTTGTGATGTAGACCTTTCCAATAACAAGCTAGAAGGATTTATCCCATCTCCTATAGTAAATTGTTTCCTAGCAAGAGTTAATTTAAGCAATAACAAGCTAAGTGGAAGCATTCCTGTCCAAATTGGTTTTGTTAACATCCTTGATATTAGTCACAATTTTCTGAGTGGTAAAGTACCTTCTTTGCTTGTTAGTGATAATGCTTCTTGGTCACAAACAGATATAGGTCGTATATTAGCAAGTTTGGATCTTAGCTACAACCATCTCTCAGGTAGCTTACCAATTGAACTTGCAAATTTACTTCATATAAACTTGTCATTCAATTTCTTTAAGTGTTCAGAAGGTTTTAAAGTTTTCCATAAAGAATCACTAATTGGTAACACTCCTAATTTCCCTTCTTGTTCTTCTCAAGTCCAAAAAACCAACAAGGCTAAACACCTCATTGTAATTATTCTTCCTGTTACTTGCATCCTCCTTATCATTTGTCTGTTCATATTGTATTTTACTCTGTCTACCAATAAAACCAAAATTGAACAAAGACAAGCCAAAAATGGAGACTTGTTATGTATATGGAACTATGATGGTAGAATTGCATTCCAAGACATCATTGAAGCAACAAATAACTTTGACTTCCAGTACTGTATTGGTACTGGGGCATATGGTAGTGTTTATAGAGCACAATTACCAAGTGGAAAAGTTGTTGCATTGAAGAAACTTCATCAAAGCGAATCTCAAAACATATCCTTCAATGAAAGCTTCCGGAACGAAGTGAAGATGTTAACAGAAATCCGTCATAGAAATATTCTGAAACTTCATGGCTTTTGCCTTCACAATCAATGCAAGTTTTTGGTTTATGAATACATGGAAAGAGGCAGCTTATTTCATGTCTTGAACAATATTAAGGAAGTTGGGGAGTTGAATTGGAGAAAGAGGGTGAATATCATTAAGGCAATGGCGAATGCATTGTCTTACATGCACCATGATTGTATTCCTCCAATTGTTCATCGAGATGTGACAAGTAGCAATGTTTTGTTGAATTCACAGCTTGATGCAGTTGTCTCAGACTTCGGTCTAGCTCGATTTATTGATCCTGATTCCTCAAATCAAACCTTTGGAGTTGGAACATATGGCTATGTTGCCCCAGAGCTTGCATATTCATGGACTGTGACAGAAAAATGTGATGTTTATAGTTTTGGAGTAGTGGCACTGGAAACATTGATGGGAAGGCATCCGAGAGAGCTAATCTCATCTTTATTCGACACTTCTCCACAAAACATGTTGTTGAAAGATCTGTTAGATTCACGAATTCGTCTACCTCATAGTCAGAAAGATGCTCAAGACATAGCTCTTGTGGTTACAATAGCACTAGCATGTTTGCATTCTAAACCAAATTCAAGACCATCAATGTTACAAGTGTCTCAACAACTTTCTAGTTCCGGACAGTCACCACTGCCATTATCTTTCTTTGAAATTTCGATCCATCAATTGATGGCTCAAGAGCTATAA 2655 0.3676 MTKYTFDLLKVAVLTLCATSYVLFPAMASTNEERYSLVKSGWWGSDYQKISNHCNWTAITCNEAGSVTDIAAHYWPFNLPPSSLKLQNLNLTAFSNLVTLYLPRMQLTGIIPPEIGTLSKLVTLDLSYNNLHGELPKSFASLTQLIVLDVSFNSLCGTIPSELGEFENLTFLSLASNRIEGPIPQQLGNLRDLQELHLSNNLINGTIPSSLGRLGNLTSLSLASNQIEGHIPQNLGNLKSLRKLSLSNNKLSGSIPLTLYQLGNLSYFYLDSNQIEGQIPPEIGSLEALEVLNLSCNSFFGPIPSQVGALIFLHELYIEFNQINSSIPSEFQNLVSLTTLYLSHNKISGVIPSELFKLPLSSLHLSTNQLVGHIPFEMRNSIRLCDVDLSNNKLEGFIPSPIVNCFLARVNLSNNKLSGSIPVQIGFVNILDISHNFLSGKVPSLLVSDNASWSQTDIGRILASLDLSYNHLSGSLPIELANLLHINLSFNFFKCSEGFKVFHKESLIGNTPNFPSCSSQVQKTNKAKHLIVIILPVTCILLIICLFILYFTLSTNKTKIEQRQAKNGDLLCIWNYDGRIAFQDIIEATNNFDFQYCIGTGAYGSVYRAQLPSGKVVALKKLHQSESQNISFNESFRNEVKMLTEIRHRNILKLHGFCLHNQCKFLVYEYMERGSLFHVLNNIKEVGELNWRKRVNIIKAMANALSYMHHDCIPPIVHRDVTSSNVLLNSQLDAVVSDFGLARFIDPDSSNQTFGVGTYGYVAPELAYSWTVTEKCDVYSFGVVALETLMGRHPRELISSLFDTSPQNMLLKDLLDSRIRLPHSQKDAQDIALVVTIALACLHSKPNSRPSMLQVSQQLSSSGQSPLPLSFFEISIHQLMAQEL* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2739 884 SMART LRR_sd22_2 166 192 - -
Amo12g2739 884 SMART LRR_sd22_2 214 237 - -
Amo12g2739 884 SMART LRR_sd22_2 238 259 - -
Amo12g2739 884 SMART LRR_sd22_2 334 355 - -
Amo12g2739 884 SMART LRR_sd22_2 118 144 - -
Amo12g2739 884 Gene3D Phosphorylase Kinase; domain 1 553 670 - -
Amo12g2739 884 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 32 405 - -
Amo12g2739 884 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 253 879 - -
Amo12g2739 884 Pfam Leucine rich repeat 313 370 IPR001611 GO:0005515
Amo12g2739 884 Pfam Leucine rich repeat 216 275 IPR001611 GO:0005515
Amo12g2739 884 Pfam Leucine rich repeat 95 155 IPR001611 GO:0005515
Amo12g2739 884 Gene3D Ribonuclease Inhibitor 26 182 IPR032675 -
Amo12g2739 884 Pfam Protein kinase domain 597 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2739 884 ProSitePatterns Tyrosine protein kinases specific active-site signature. 716 728 IPR008266 GO:0004672|GO:0006468
Amo12g2739 884 Gene3D Ribonuclease Inhibitor 280 523 IPR032675 -
Amo12g2739 884 Gene3D Transferase(Phosphotransferase) domain 1 671 866 - -
Amo12g2739 884 SUPERFAMILY RNI-like 100 448 - -
Amo12g2739 884 Gene3D Ribonuclease Inhibitor 183 279 IPR032675 -
Amo12g2739 884 ProSitePatterns Protein kinases ATP-binding region signature. 598 620 IPR017441 GO:0005524
Amo12g2739 884 ProSiteProfiles Protein kinase domain profile. 592 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2739 884 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 32 405 - -
Amo12g2739 884 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 253 879 - -
Amo12g2739 884 SUPERFAMILY Protein kinase-like (PK-like) 577 859 IPR011009 -
Amo12g2739 884 ProSiteProfiles Leucine-rich repeat profile. 336 357 IPR001611 GO:0005515
Amo12g2739 884 SMART LRR_typ_2 142 166 IPR003591 -
Amo12g2739 884 SMART LRR_typ_2 118 141 IPR003591 -
Amo12g2739 884 SMART LRR_typ_2 334 358 IPR003591 -
Amo12g2739 884 SMART LRR_typ_2 262 286 IPR003591 -
Amo12g2739 884 SMART LRR_typ_2 190 213 IPR003591 -
Amo12g2739 884 SMART LRR_typ_2 214 237 IPR003591 -
Amo12g2739 884 SMART LRR_typ_2 310 333 IPR003591 -
Amo12g2739 884 SMART LRR_typ_2 238 261 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2739 Amo-Chr12 113026724 113029712 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2739 94 764 Receptor kinase-like Gene Family AT4G08850 36.631 9.36e-136 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo12g2739 Pkinase 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2739 - - aprc:113851126 845.884