Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2727 ATGCCGGGGTTAGTGATGGTAACGAGAGGCGGCGGATGCGGTGGTGGTGGCGGTGGAGGAGGGAAGAGAGCGAGACCTGATGCTACTGAGGCGGAAGAAGAAGAGCAGAGACAGCTGTCACTAGTGGCGTTATTGATAGCGGCGCTGAGAAAATCTATGGTGGCTTGCAGAGTAGACAGACCATCAGAAGAAGTGATCTCCACTGTCCATCATAATCACCAGATGGAGATCGGATGGCCGACAGACGTCCAGCACATCACACATGTAACGTTTGATCGATTCAATGGCTTCCTCGGTCTCCCTCTTGAGTTCCAAGTTGAGATCCCCGGTCGCGTTCCCAGTGCTAGTGTGAGTGTGTTTGGGGTCTCAGCAGAATCTATGCAGTGTTCTTATGATTCCAAAGGAAACAGTGTCCCCACTATTCTATTGCTAATGCAGGACCGTTTATACTCACAAGGAGGCTTAAAGGCTGAAGGTATATTTCGGATAAATCCGGAAAATAGTCAAGAGGAGCATGTGAGGGARCAGTTAAACAGAGGCATTGTGCCGGACAACATCGATGTCCATTGCTTGGCCGGGCTAATTAAAGCCTGGTTCCGGGAGCTTCCTTCGGGGATACTAGATGGACTCTCACCAGAGCAAGTTCTTCAGTGCAACACGGAAGAAGAGTCCGTTGAGCTCGTGAAGCAGCTAASGCCAACGGAYTCTGCATTGCTCAGCTGGGCTATTGATCTCATGGCTGATGTTGTGGAAGAGGAGGAGTGTAACAAAATGAATGCTAGAAATATTGCAATGGTTTTTGCCCCAAACATGACTCAGATGTCTGATCCTCTAACTGCCCTGATGCATGCGGTTCAAGTGATGAACTTGCTCAAGACACTGATAATGAAGAATCTAAGAGAACGTGAAGAAACCACAACCGGATATTCTCCCATGTCATTTCGCTCATCGAATCATCAGTCCGAGGAAGAATATGACAGTCAGCGAGAAACGGACACCAGTGGTGAATTGAGAGGGACTAAGTCGGATTATGACGATCATCACCCTCACTATAGTCATAGCAGTGAGGGGGAGGAAGAAAGGGAGGCTGAATCTTTAAGCGAGATTGAAGAATGCTTCTTGAAGCAGTTGGATGATGATAACACTAAAGGGTTCTCACAACAAGAACCTTCAGGCTATTTGCAAGAGTACATTAACCCTATAAGTTGTTGCTCAGATTTTAGCATCAAATCCATTGCATCAATTGCCGACGGAACCATAAATTCCAGCTTGAGTTCCATTGATGGAGAAAGGTTGAGGACAAGGGTGGCTGCCGTGAGCTCAAACATCGAAAAAAACAGCCGGTCAATAGAATGTACAGGAACCAATGACGTGAAGATGATCGATAAGTTTTCCGATTCTGCGCCGCCGCTGCTTGCATCTAGTTGA 1428 0.4727 MPGLVMVTRGGGCGGGGGGGGKRARPDATEAEEEEQRQLSLVALLIAALRKSMVACRVDRPSEEVISTVHHNHQMEIGWPTDVQHITHVTFDRFNGFLGLPLEFQVEIPGRVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQDRLYSQGGLKAEGIFRINPENSQEEHVREQLNRGIVPDNIDVHCLAGLIKAWFRELPSGILDGLSPEQVLQCNTEEESVELVKQLXPTDSALLSWAIDLMADVVEEEECNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKNLREREETTTGYSPMSFRSSNHQSEEEYDSQRETDTSGELRGTKSDYDDHHPHYSHSSEGEEEREAESLSEIEECFLKQLDDDNTKGFSQQEPSGYLQEYINPISCCSDFSIKSIASIADGTINSSLSSIDGERLRTRVAAVSSNIEKNSRSIECTGTNDVKMIDKFSDSAPPLLASS* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2727 475 Gene3D CRIB domain 71 108 IPR036936 -
Amo12g2727 475 MobiDBLite consensus disorder prediction 319 360 - -
Amo12g2727 475 SMART PBD_5 77 111 IPR000095 -
Amo12g2727 475 ProSiteProfiles Rho GTPase-activating proteins domain profile. 122 303 IPR000198 GO:0007165
Amo12g2727 475 SUPERFAMILY GTPase activation domain, GAP 118 296 IPR008936 GO:0007165
Amo12g2727 475 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 1 443 - -
Amo12g2727 475 SMART RhoGAP_3 136 299 IPR000198 GO:0007165
Amo12g2727 475 Pfam RhoGAP domain 139 273 IPR000198 GO:0007165
Amo12g2727 475 Pfam P21-Rho-binding domain 76 106 IPR000095 -
Amo12g2727 475 Gene3D Rho GTPase activation protein 109 301 IPR008936 GO:0007165
Amo12g2727 475 MobiDBLite consensus disorder prediction 7 34 - -
Amo12g2727 475 CDD RhoGAP 139 298 - -
Amo12g2727 475 PANTHER MKIAA1688 PROTEIN 1 443 IPR044785 GO:0005096
Amo12g2727 475 MobiDBLite consensus disorder prediction 302 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2727 Amo-Chr12 112779966 112783260 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2727 - - gmx:100807134 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1723 16 34642955 34645589 Amo12g2727 12 112779966 112783260 PCT
Amo06g1086 06 16712230 16714796 Amo12g2727 12 112779966 112783260 PCT
Amo12g2727 12 112779966 112783260 Amo16g1723 16 34642955 34645589 PCT
Amo12g2727 12 112779966 112783260 Amo06g1086 06 16712230 16714796 PCT