Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2724 ATGGATCCTTCAAGCTCAGATTGTGTGCTGAATCCAGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAGTTTATGGCTTTAAAGCCTCTCTCGGTTGTTGATGACGAGCTTGTTCCGAAGGTCGGAATGACCTTTACCACCCTTGAAGATGCCGGAAAATTTTACAGGAACTACGCCAAGGCTGCAGGTTTCTCTACAAGAGTTCGGTGCACAAATAGGAAGGGAAACGAGATTAAGAATCAACTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCAACCGAGAAGACCAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAGCAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACGATAGAGAATAACGACGAGGCCGTGTGTGTTTGGGTGTATTATGCAGATCTGTACGAAGACCGTCACATATGGGTTCCTATCTATCTGGACCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTACATCACCCGGAACAGCTCGCTCATTCAGTTCGTCAAACAGTACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGCGTACACTCACGCAAAGTTTAGGGAAGTCCAAGCCCAATTCAGAGGAAAGGCGAATTGCATCACCAGATTAAAGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGCGGTTACCTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGCCGTCACGCACTAAGCGTGTTAAGCTTCGAACAAGTAAGCCAAGTGTCACCTAGATACATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCAACACACACACATCAAGAGCAGCCACGACGAGCCACTAATGGAGCCAAGAAGCAAGAGGTTGACCAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCCTCCGAATCGGAGGAGCTGA 1227 0.4556 MDPSSSDCVLNPGEVDYEFESNEVPEFMALKPLSVVDDELVPKVGMTFTTLEDAGKFYRNYAKAAGFSTRVRCTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHRELSMSIRRTIENNDEAVCVWVYYADLYEDRHIWVPIYLDHHFWAGMRSTQRSESMHSFFNKYITRNSSLIQFVKQYDNCLGSREQAERESDAADFHTVIPCATKSSIEAQFQDAYTHAKFREVQAQFRGKANCITRLKNSALGYSVYEVGEQVSSSIFNKFAVTYDSVAAEVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRQHTHIKSSHDEPLMEPRSKRLTNWFFVRKIFANLPPNRRS* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2724 408 Pfam SWIM zinc finger 322 346 IPR007527 GO:0008270
Amo12g2724 408 ProSiteProfiles Zinc finger SWIM-type profile. 313 349 IPR007527 GO:0008270
Amo12g2724 408 Pfam FAR1 DNA-binding domain 56 141 IPR004330 -
Amo12g2724 408 PANTHER OS03G0843700 PROTEIN 29 153 - -
Amo12g2724 408 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 29 153 IPR031052 GO:0006355
Amo12g2724 408 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 177 378 IPR031052 GO:0006355
Amo12g2724 408 SMART 26again6 324 351 IPR006564 GO:0008270
Amo12g2724 408 PANTHER OS03G0843700 PROTEIN 177 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2724 Amo-Chr12 112753264 112755811 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo12g2724 FAR1 1.1e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2724 - - adu:110280503 422.165