Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2706 ATGGAGCTGAATGAAGTTGGAATCCTTGGAATTTGGGGTATGGGCGGTATAGGTAAAACAACCATAGCTCAATTTATATTCAATAAATATTCCTCAGAGTACGAAGGTTGTTGCTTCTTGAAAAATGTCGGAGAAGAATCAGAAAGACATGGTCTGGATTATTTGTGTGAGCAACTTGTTTCTCAACTACTAAAGAAACAAAATATCCCTGTAAGAGGATCAGCCAACCCCATATCTGTCTGTGATCACAAAAGTTTGAGTGGGAAAAAGTTTTTTATAGTACTTGATGATGTGGATGCATCAAGGAAATTAGAGTATCTTGGTGAACAACTCACTTTGGGAGCAGGTAGTAGAGTCATCGTAACAACTGCAGACAAGCAGATATTTAAAAAAGTGCATGGAATATATGAGGTCCGGCCGTTGAACTTTTCAAGCTCCCTTCAGCTGTTCTGCTTAAATGCCTTTGGCCATGCTTCTCCTAAAATTGGTTATCAAGAACTTTCTAAAATGGTGGTTAACTATGCCAAAGGCATTCCATTAGCGTTAGAAGTTTTGGGTTCTTTTTTACGCTCAAGAAAAAGCATACGAGTCCGGGAAAGTGCGCTGGAAAAACTCAGGGTTCATCCCAATAAGGTCGTTTACAATGTCTTGAAATTGAGTGTGGATGAACTAGACTATCATGAGAAAATTATATTTCTTGATATTGTATTCTTTTTCAAAGGAAAAAATAAGGATGAAGTCTCATGTTTTCTGGAGTCTTGTAAATTATTTGGAAGCATTGGAATAGACAGCCTCCAAGATAAGGCTCTTATAACTATTTCACCGCTGAACAAAATTGAAATGCATGATCTGATAGAACAAACGGGTTTGGAAATTGTTTTCAATGAATCACCTAACGACCTCAAAAAGCGTAGCCGATTGAGGAATCCTGAGAATGTCAGGAATGTATTGGAAGATAGTGAGGGAGAAAAATCAGTTGAAGGCATTTTGTATAACTTGTCTGAATCTGGAGATCTACACTTAAGTGCAAACACCTTTAAAAATATGCCTCACCTAAGGTTTCTTAGGTTTTATGGTGCTTGGCATGGAAGAAAATCGAATGTATACGTTGAAACAACCCTGGAGCCGTTTTCTGCTAAACTCAGATATTTGGAGTGGTGTGATTATCCTCTGAATTCTCTACCATCAAGGTTTTGTGCAGAGGTTACAGTCAAATTTCGAAACTCTGGGATGGAAAGCAGGGAGGCTCTTGATTCTCAATTAGGTCTCTGCAATCACGAATTCCTGGATGTAAAACAATAA 1302 0.3817 MELNEVGILGIWGMGGIGKTTIAQFIFNKYSSEYEGCCFLKNVGEESERHGLDYLCEQLVSQLLKKQNIPVRGSANPISVCDHKSLSGKKFFIVLDDVDASRKLEYLGEQLTLGAGSRVIVTTADKQIFKKVHGIYEVRPLNFSSSLQLFCLNAFGHASPKIGYQELSKMVVNYAKGIPLALEVLGSFLRSRKSIRVRESALEKLRVHPNKVVYNVLKLSVDELDYHEKIIFLDIVFFFKGKNKDEVSCFLESCKLFGSIGIDSLQDKALITISPLNKIEMHDLIEQTGLEIVFNESPNDLKKRSRLRNPENVRNVLEDSEGEKSVEGILYNLSESGDLHLSANTFKNMPHLRFLRFYGAWHGRKSNVYVETTLEPFSAKLRYLEWCDYPLNSLPSRFCAEVTVKFRNSGMESREALDSQLGLCNHEFLDVKQ* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2706 433 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 406 IPR044974 GO:0006952
Amo12g2706 433 Gene3D - 141 225 IPR042197 -
Amo12g2706 433 Pfam NB-ARC domain 3 217 IPR002182 GO:0043531
Amo12g2706 433 PRINTS Disease resistance protein signature 8 23 - -
Amo12g2706 433 PRINTS Disease resistance protein signature 85 99 - -
Amo12g2706 433 PRINTS Disease resistance protein signature 175 189 - -
Amo12g2706 433 SUPERFAMILY "Winged helix" DNA-binding domain 213 317 IPR036390 -
Amo12g2706 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 235 IPR027417 -
Amo12g2706 433 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 3 406 - -
Amo12g2706 433 Gene3D - 1 137 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2706 Amo-Chr12 112453743 112455143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2706 5 398 WRKY Transcription Factor Family AT5G45050 35.266 1.80e-60 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2706 - - ahf:112730601 857.055