Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2705 ATGGCATATTCTCCTTTCTCTAGTTCATCTGCTTTCAATGTTCCTCTAATCAAACATGATCTCTTCGTCAGTTTTCGAGGAACAGACATTCGCACTTCTTTTCTTAGTCATTTGGCAACAAACTTGAAGCGTAATCAAATTGATTTCTTTGTTGACGATGAAAAGCTTCATCCTGGAGATGAGATTTCATCCACCCTCCTTCGAGCAATCGAGCAATCATACATTTCATTGGTCATCTTCTCGGAACACTATGCTTCTTCAAGATGGTGTTTGGAGGAGCTTGTGAAGATTATTGAATGCATGGAACAGTATAAAAGGATTGTGATACCTGTTTTTTATAATGTTGATCCTTCTCATGTAAGGCATCAAAAAGGAACTTTTGCAGAAGCTTTTGATGTCCACAAAAAGAGATATGAGGAGGAAATTATGCAGAATTGGAAATCTGTTCTCGAGAAGACGGCAAATTTATCTGGAATTCATTATCCATCGAAATATCGAAATGAATCAGAACTCATCCAAGATATTGTCAAGAATATTTCGGAAAAATTGTCGCATCTTTTTTCAAATGCACCCCAAGACCTTGTCGGAATTGATGAACATTTTAAATTTTTTCAACCTTTAATGACAATGGAGTCTGATGAAGTTCGAACKGTGGGGATTTGGGGGATGGGAGGCATAGGTAAAACAACAATTGCTAGAGCAATATTTGATAGATATGCCTCTCGATATGAAGGTTGCTGCTTTCTAGAAAATGTAAGAGAAGAGTCACAAAAGTCTGGTAAACACAGCTTATATGAAAAACTTATTTCTGAACTACTTGAGGGAGAACATCTTGTGAAGGGATCAACCCATGCAAGATCTATTGATGTCAAGAGAAGGTTGAGTCGGAAAAAGGTGCTCATAGTGCTTGATGATGTGGATGCATTAGACAAGTTAGATTATCTAACAAGAGAATCAATCTGTCTGGGAGCTGGTAGTAGGGTCATTGTAACAACAAAAGACGAGCAAATTCTAATTGCCAATGAAGGAGTGGATATAAGATACAAGGTTTGGGGATTGAGCTTTGAGAGTTCCCTTGAGCTTTTTTGCTTAAAAGCCTTTCACAAAAGCTATCCTGAACATGGATATGAAGAGCTTTCAGAAATGGCAGTTAATTATACAGAAGGCATTCCATTAGCATTGAAAGTATTGGGATCCTTTCTACACTCAAGGAGCATAAAAGAATGGGAAAGTGCATTGAAAAAACTCAGGGTTCATCCCAATGTGGACATCTACAATGTCTTAAAATTGAGTTATGATGGTTTAGATGATTTAGATAAGAATATATTCCTTGACATTGCATTCTTTTTCAGAGGAGAATACAAGGATAATGTTATAAGCTTTCTAGACTGTTGTGGTTTCTTTGGCGACATTGGTATAAGCACTCTTGAGCGTAAAGCTCTTATAACTATTGTTGGCGATATAATAGATATGCATGACTTGATACAACAAATGGGTTGGGAAGTCGTTCGCCAAGAATCAAATAAAAATTCTGGAAAGCTCACTCGAATAAATAAACCTGAAGATTTCTGCAACTTATTGAAAAATAGTGAGGAAAAAAGTTTAGTAGAAGGCATTATGATAGACTTGTCCCAAATTGGAGATCTACACTTGAAATCGGACACCTTTAAAAATATGCCCCATCTAAGATTTCTTAAGTTTTATGCTCCTTGGTTTCGAAGACAGTGCGAAGTCTATGTTCCCACAACCCTGGACCCGTTTCCTGCAAAACTCGTCTATTTGGAGTGGGATAGTTGTCCTCTGAATTCTCTACCATCAAGGTTTTGTGTAGAGAAACTTGTTAAGCTTAGGATGTGTAACAGTCAAATTTCTAAACTCTGGGATGGAGCACAGGTACTAATACTAATAGTCTAA 1914 0.3715 MAYSPFSSSSAFNVPLIKHDLFVSFRGTDIRTSFLSHLATNLKRNQIDFFVDDEKLHPGDEISSTLLRAIEQSYISLVIFSEHYASSRWCLEELVKIIECMEQYKRIVIPVFYNVDPSHVRHQKGTFAEAFDVHKKRYEEEIMQNWKSVLEKTANLSGIHYPSKYRNESELIQDIVKNISEKLSHLFSNAPQDLVGIDEHFKFFQPLMTMESDEVRTVGIWGMGGIGKTTIARAIFDRYASRYEGCCFLENVREESQKSGKHSLYEKLISELLEGEHLVKGSTHARSIDVKRRLSRKKVLIVLDDVDALDKLDYLTRESICLGAGSRVIVTTKDEQILIANEGVDIRYKVWGLSFESSLELFCLKAFHKSYPEHGYEELSEMAVNYTEGIPLALKVLGSFLHSRSIKEWESALKKLRVHPNVDIYNVLKLSYDGLDDLDKNIFLDIAFFFRGEYKDNVISFLDCCGFFGDIGISTLERKALITIVGDIIDMHDLIQQMGWEVVRQESNKNSGKLTRINKPEDFCNLLKNSEEKSLVEGIMIDLSQIGDLHLKSDTFKNMPHLRFLKFYAPWFRRQCEVYVPTTLDPFPAKLVYLEWDSCPLNSLPSRFCVEKLVKLRMCNSQISKLWDGAQVLILIV* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2705 637 Pfam NB-ARC domain 207 422 IPR002182 GO:0043531
Amo12g2705 637 SUPERFAMILY "Winged helix" DNA-binding domain 423 527 IPR036390 -
Amo12g2705 637 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 631 IPR044974 GO:0006952
Amo12g2705 637 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 158 IPR035897 -
Amo12g2705 637 Pfam Leucine Rich Repeat 612 631 IPR011713 -
Amo12g2705 637 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 446 IPR027417 -
Amo12g2705 637 Gene3D - 16 180 IPR035897 -
Amo12g2705 637 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Amo12g2705 637 Pfam TIR domain 18 192 IPR000157 GO:0007165
Amo12g2705 637 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 631 - -
Amo12g2705 637 PRINTS Disease resistance protein signature 293 307 - -
Amo12g2705 637 PRINTS Disease resistance protein signature 217 232 - -
Amo12g2705 637 PRINTS Disease resistance protein signature 387 401 - -
Amo12g2705 637 SMART till_3 18 156 IPR000157 GO:0007165
Amo12g2705 637 Gene3D - 353 436 IPR042197 -
Amo12g2705 637 Gene3D - 181 343 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2705 Amo-Chr12 112436426 112444195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2705 3 632 WRKY Transcription Factor Family AT4G12020 31.094 7.84e-76 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2705 - - aip:107627899 878.626