Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2703 ATGACATATTCTCCTTTCTCTAGTTCATCTGCTTTCAATGTTCCACTAATCAAACATGATGTCTTCGTCAGTTTTCGAGGAATAGACATTCGCACTTCTTTTCTTAGTCATTTGACAACAGACTTGAAGCGTAATCAAATTGATTTCTTTGTTGACGATGAAAAACTTCATCCTGGAGATCAGATTTCATCCACCCTCCTTCGAGCAATTGAGCAATCATACATGTCATTGGTTATCTTTTCGGAACACTATGCTTCTTCAAGATGGTGTATGGAGGAGCTTGTGAAGATTATTGAATGCATGGAACAATATGAAAGGATTGTGATACCTGTTTTTTATAATGTTGATCCTTCTCATATAAGGCATCAAAAAGGAACTTTTGCAGAAGCTTTTGATGTCTACAAAGAGAGATATGAAGAGGAAATTATGCAGAATTGGAAATCTATTTTGAAGAAGACGGCAAATTTATCTGGAATTCATTATCCATCCAAATATCGAAATGAATCAGAACTCATCAAAGATATTGTCAAGAATATTTCGGAAAAATTATCGCATCTTTTTTCAAATGCACCCCAAGACCTTGTCGGAATTGATGAACATTTTGAATTTCTTCAACCTTTAATGGCAATGAAGTCTGATGAAGTTCGAATTGTGGGAATTTGGGGAATGGGAGGCATAGGTAAAACAACAATTGCTAGAGCAATATTCGACAGATATGCCTCTCGATATGAAGGTTGCTGCTTTCTAGAAAATGTAAGAGAAAAATCTCAAAAGTCTGGTGAACACAGCTTATATGAGAAACTTATTTCTGAACTACTTGAGGGAGAACATCTCCTTGTGAAAGGATCAGCCCATGCAAGATCTATGAATGTTAAGAGAAGGTTGAGTCGGAAAAAGGTGCTCATAGTGCTTGATGATGTGGATGCATTAGACAAGTTAGATTATCTAACAAGAGAACCAATCTGTTTGGGAGCAGGTAGTAGGGTCATTGTAACAACAAGAGACGAGCAAATTCTAATTGCTAAAGGAGTGGATAAAAGATACAAGGTTTGGGGATTGAGCTTTGAGAGTTCCCTTGAGCTTTTTTGCTTAAAAGCCTTTCACAAAAGCTGTCCTAAACATGGATATGAAGAGCTTTCAGAAATGGCAGTTAATTATGCAGAAGGCATTCCATTAGCATTGAAAGTATTGGGATCCTTTCTACACTCAAGGAGCATAGAAGAATGGGAAAGTGCATTGAAAAAACTCAGGGTTCATTCCAATGTGGACATCTACAATGTCTTAAAATTGAGTTATGATGGATTAGATGATTCAGACAAGAACATATTCCTCGACATTGCATTCTTTTTAAGAGGAGAATACAAGGATAATGTTATAAGGTTTTTAGACTGTTGTGGTTTCTTTGGCGACATTGGTATAAGCACTCTTCAGCGTAAATCTCTTATAACTATTTTCAGCGATAGAATAGAAATGTATGACTTGATACAACAAATGGGTTGGGAAGTCGTTCGCCAAGAATCAAATAAAGATCCTGGAAAACTCACTCGAATAAATAAACCTGAAGATTTCTGCAACTTATTGAAAAATAGTGAGGAAAAAAGTTTAGTAGAAGGCATTATGATAGACTTGTCCCAAATTGGAGATCTACACTTAAATGCGGACACCTTTAAAAATATGCCTCGTCTAAGATTTCTTAAGCTTTATGCTCCTTCGGATCAAAGACAGTCCAAAGTCTACATTCCCACAACCCTGGACCCGTTTCCTGCAAAACGCAGCTATCTGTAG 1785 0.3669 MTYSPFSSSSAFNVPLIKHDVFVSFRGIDIRTSFLSHLTTDLKRNQIDFFVDDEKLHPGDQISSTLLRAIEQSYMSLVIFSEHYASSRWCMEELVKIIECMEQYERIVIPVFYNVDPSHIRHQKGTFAEAFDVYKERYEEEIMQNWKSILKKTANLSGIHYPSKYRNESELIKDIVKNISEKLSHLFSNAPQDLVGIDEHFEFLQPLMAMKSDEVRIVGIWGMGGIGKTTIARAIFDRYASRYEGCCFLENVREKSQKSGEHSLYEKLISELLEGEHLLVKGSAHARSMNVKRRLSRKKVLIVLDDVDALDKLDYLTREPICLGAGSRVIVTTRDEQILIAKGVDKRYKVWGLSFESSLELFCLKAFHKSCPKHGYEELSEMAVNYAEGIPLALKVLGSFLHSRSIEEWESALKKLRVHSNVDIYNVLKLSYDGLDDSDKNIFLDIAFFLRGEYKDNVIRFLDCCGFFGDIGISTLQRKSLITIFSDRIEMYDLIQQMGWEVVRQESNKDPGKLTRINKPEDFCNLLKNSEEKSLVEGIMIDLSQIGDLHLNADTFKNMPRLRFLKLYAPSDQRQSKVYIPTTLDPFPAKRSYL* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2703 594 PRINTS Disease resistance protein signature 294 308 - -
Amo12g2703 594 PRINTS Disease resistance protein signature 387 401 - -
Amo12g2703 594 PRINTS Disease resistance protein signature 217 232 - -
Amo12g2703 594 Gene3D - 353 436 IPR042197 -
Amo12g2703 594 SUPERFAMILY "Winged helix" DNA-binding domain 423 527 IPR036390 -
Amo12g2703 594 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Amo12g2703 594 Pfam TIR domain 18 192 IPR000157 GO:0007165
Amo12g2703 594 Gene3D - 17 184 IPR035897 -
Amo12g2703 594 Pfam NB-ARC domain 207 422 IPR002182 GO:0043531
Amo12g2703 594 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 572 IPR044974 GO:0006952
Amo12g2703 594 SMART till_3 18 156 IPR000157 GO:0007165
Amo12g2703 594 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 158 IPR035897 -
Amo12g2703 594 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 12 572 - -
Amo12g2703 594 Gene3D - 185 344 IPR027417 -
Amo12g2703 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 446 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2703 Amo-Chr12 112348082 112354804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2703 3 590 WRKY Transcription Factor Family AT4G12020 30.678 1.34e-69 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2703 - - aip:107627899 846.654