Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2661 ATGGCGATGAGGGCGGCAGCGTTGGCAGCTCCCGGAGGTTTGCGGCGGCTCTTCTGCACAAACACGACGAAGCCATCTTTGAGCTTCCCCTTCATTCCGCCTCCACAGGCGGGGGCGCAGCCAGCTCGGCCTATGGCGGAACCCAACACCAACCTCTTCGTCTCTGGGCTTAGCAAACGTACTACTTCAGAGAAGTTGAGAGACGAATTTGCAAAGTTTGGTGAAGTTGTTCACGCAAGGGTGGTAACTGACCGAGTATCAGGTTACTCTAAGGGGTTTGGTTTTGTGAAGTATGCCACTCTAGAAGATGCTGCAAAGGGCATCGAGGGCATGGATGGCAAGTTTTTGGATGGCTGGGTTATCTTCGCTGAGTACGCAAGGCCAAGACCTCCGCCGGGACAACCTGAAAACAATATGCCACCTCAATATGGGCGGCAGTGA 441 0.542 MAMRAAALAAPGGLRRLFCTNTTKPSLSFPFIPPPQAGAQPARPMAEPNTNLFVSGLSKRTTSEKLRDEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQPENNMPPQYGRQ* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2661 146 SUPERFAMILY RNA-binding domain, RBD 25 144 IPR035979 GO:0003676
Amo12g2661 146 Gene3D - 32 138 IPR012677 -
Amo12g2661 146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Amo12g2661 146 MobiDBLite consensus disorder prediction 126 146 - -
Amo12g2661 146 PANTHER TRANSFORMER-2-RELATED 1 145 - -
Amo12g2661 146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 118 IPR000504 GO:0003723
Amo12g2661 146 SMART rrm1_1 51 124 IPR000504 GO:0003723
Amo12g2661 146 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 1 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2661 Amo-Chr12 111505661 111509993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2661 49 130 Eukaryotic Initiation Factors Gene Family AT4G34110 35.366 1.21e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2661 - - gmx:100789351 199.134