Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2653 ATGCCACCTTCTGTGGAATACATTGAAGCTGTTCTTTCTGTACTGAGATGCGGGGAGGCTTTCTTGCCTTTGGACCCTTATTGGCCGAAAGAAAGGTTATTGTCGATTGTCGCTTCCTCAAGCGCTGATCTCATTATAGGTTCCAAATCTTCATTTGGTAATGAGTTGGACGAGCTTGATGAATCGCATTGGCTGGTAAAGTCAGTAAGTTGTCCTGTTTTAAGCGTCTCCATTGAAGAAAGCCTTCAAGAATATAGTGATTTGACAGATTTGTTATGGCCTTGTGCCAATGAAAAGAAGAGATCATTCTGTTATTTAATGTATACTTCTGGTTCAACTGGAAAGCCGAAAGGAGTGTGTGGCACTGAACAAGGTCTTTCAAATCGCTTTTTGTGGATGCAAGGATTGTATCCTCTGAATGGGCAGGAATCATTGTTGTTTAAAACATCAATCAGCTTCGTTGATCACCTGCAAGAATTTTTCAGTGCTATTTTGACAGCTTGTATGTTAGTTATTCCTCCTTTCAGTGTTCTCAAAGAAAACATATATTCTATAATAGATTTTCTTCAGGCTTATAGTATTAATAGGCTTACAGCTGTTCCATCGCTAATGAAGACAATTCTTCCTGGATTACAAACTCATGTTGGCCTGCGGGTTCAAAGGTCACTGAAATTACTTGTGCTAAGTGGTGAACTGTTTCCCTTGACCTTGTGGGAGAAGCTTTCAACTGTTTTACCAAACACATTTATCTTGAATTTATATGGAAGTACCGAGGTCTCAGGTGACTGTACATATTTTGATTGCAAGAGAATGCCATTGGTTTTGAAGGAAGATACGCTAACTAGTGTGCCAATAGGTTTACCAATTTATAATTGTGATGTTGTGCTTCTTTGTGAAAATGCCTCGTCAAAGGAGGGAGAGCTATATGTTGGTGGTTCCTGCATCTCTAGAGGCTACTATACTGAGTCTAATATGAAGTCTGAAAATTTTGTAAAATTGCCTCAAAGTTATTGGATGAATTCCATGAATGATTGCAAAAGCAAATTATACTTCAGAACTGGTGATTTTGTCAAACAGTTGTCAAGTGGTGACTTTGTATTTTTGGGAAGAAAAGACCGCATTGTAAAAATCAATGGTCATCGTATTGCCCTGGAAGAAATTGAAGATTTGTTAAGAAAGCATCCATATATAAATGATGCTGCTGTAATTTGTCGGAATATTGAAGAGCTTTTGCTTCTGGAAGCCTTTATAATATTAGAAGACAAGGAAAGATTGGACGAATCATTAATACCTGCAATTAGAAGTTGGATGATTAGCAAACTTCCATCGGCTGTGGTTCCTAATTATTTCATCTTCGTGGATTCATTTCCTGTGTCATCCAGTGGTAAAGTTAATTATGAGTTGTTGGTGGACTCAAGATTATTGACAATGAATGTCAAGGATAAGGTTGTTAACATTGACTGCAGCAGTCTTCTGCAACGAATTCAAAAGGCCTTTCATGATGCTTTAATGGTTGAAAAGGTTTGCAACGATGATGATTTCTTTACCATGGGTGGTAACTCTCTTTCTGCTGCACATGTTGCTCACAGTTTGGGGATCGACATGAGATTTCTTTATTACCACCCAAGTCCTTTTAAGCTTTGTATGGCTCTTCTTCAGAAAAGAGGATCCTGCGCTTTGCATAACAAGTTGGATGATTGTTTTGAACTAATTACAGAAAGACAAGATAACCATGTCTCATCCAATCATATTGAAAATTCTAATACCCATGAGTCATGGATGATTTCTAAAGGTAATGATGATAATTCTTTACCTTCTAAGCGCTTGAAGAGGGGTATTACAGATGTTATGTTGAGTGCTGATGAATCTTCCCCATGGCATTTCTCTCCAATATTTGAATCATCTTCATTTAGCCGATGCAACAAGGTGTTGCATAAAGGGCAGCCTGCAGTTACTGGTTCTCAGCAAACAACTTGGTTGGCAAATGCTCCAAGGGGCAGCAGAGGTCATATAAAGGACTGTTGGAAAGTTTACATGGAATCTTGTGTTGATGCTTCCCCAATGCTTGTGTCTAAAGGCTCAGACATTTATTTATTCATTGGATCTCATTCACATAAATTTCTCTGTATAAATGCCAGAAGTGGTTCTGTCCAGTGGGAGATCAAACTAGATGGACGCGTTGAATGTACAGCAGCAATTGTATCAGATTTCTCTCAGGTGGTTGTTGGATGCTACATGGGAAAAATTTATTTTCTAGATTTTTCAAGTGGAACCATCTGTTGGAGTTTTCAAACGTCTGGTGAGGTAAAGTCACAACCAGTTGTAGACACAAGAAGACATTTGATCTGGTGTGGCTCTCATGATCATAACTTATATGCGCTTGATTACAAAAATCATTGCTGTGTTTATAAACTACCTTGTGGAGGCAGTATATTTGGGTCACCTGTAATTGATGAGGTTCGTGGATTGCTTTATGTGGCTTCTACTGGTGGTAGAATTACAGCTATATCAATATCGGATTTTTCTTTTACTGTATTGTGGCTAAATGACTTGGAAGTCCCTGTCTTTGGTTCTCTGGGCATCACCGAAATTGGAACTGTAATATGTTGCTTAGTAGATGGCCATGTTCTTGCATTGGATCCAAACGGATCCACAGTTTGGAAGCAAACAACTGATGGACCTATATTTTCTGGGCCATGCATGCCTTCTACACTTCCTCATGAGGTGCTAGTATGCTCCAGAAAGGGAAGCGTGTACTCTTTTAAACCGGAGAATGGGGATTTATTATGGGAACACAATGTTGGAGATCCAATAACTTCATCTGCTTATGTTGATGAGCACTTGCAGCTAGTCTCTGATGATGCCTCACATTCCTCAGACAGGTCAATCTCCATTTGTTCAAGTTCTGGAAGAATACACTTACTTAGAGAGAACCTGAATTCCTCCGATGACACAATTCTACGGAAAATTGATGTGCAGGAATTTGCAAGACTTGACTTGCTCGGCGATATATTCTCTTCGCCGTTAATGATTGGAGGCCGGATTTTCGTTGGTTGTCGGGACGATTACTTGCATTGTGTTACCCTTGAAATGCCAAAGCAACACGAAAGTTAA 3114 0.3924 MPPSVEYIEAVLSVLRCGEAFLPLDPYWPKERLLSIVASSSADLIIGSKSSFGNELDELDESHWLVKSVSCPVLSVSIEESLQEYSDLTDLLWPCANEKKRSFCYLMYTSGSTGKPKGVCGTEQGLSNRFLWMQGLYPLNGQESLLFKTSISFVDHLQEFFSAILTACMLVIPPFSVLKENIYSIIDFLQAYSINRLTAVPSLMKTILPGLQTHVGLRVQRSLKLLVLSGELFPLTLWEKLSTVLPNTFILNLYGSTEVSGDCTYFDCKRMPLVLKEDTLTSVPIGLPIYNCDVVLLCENASSKEGELYVGGSCISRGYYTESNMKSENFVKLPQSYWMNSMNDCKSKLYFRTGDFVKQLSSGDFVFLGRKDRIVKINGHRIALEEIEDLLRKHPYINDAAVICRNIEELLLLEAFIILEDKERLDESLIPAIRSWMISKLPSAVVPNYFIFVDSFPVSSSGKVNYELLVDSRLLTMNVKDKVVNIDCSSLLQRIQKAFHDALMVEKVCNDDDFFTMGGNSLSAAHVAHSLGIDMRFLYYHPSPFKLCMALLQKRGSCALHNKLDDCFELITERQDNHVSSNHIENSNTHESWMISKGNDDNSLPSKRLKRGITDVMLSADESSPWHFSPIFESSSFSRCNKVLHKGQPAVTGSQQTTWLANAPRGSRGHIKDCWKVYMESCVDASPMLVSKGSDIYLFIGSHSHKFLCINARSGSVQWEIKLDGRVECTAAIVSDFSQVVVGCYMGKIYFLDFSSGTICWSFQTSGEVKSQPVVDTRRHLIWCGSHDHNLYALDYKNHCCVYKLPCGGSIFGSPVIDEVRGLLYVASTGGRITAISISDFSFTVLWLNDLEVPVFGSLGITEIGTVICCLVDGHVLALDPNGSTVWKQTTDGPIFSGPCMPSTLPHEVLVCSRKGSVYSFKPENGDLLWEHNVGDPITSSAYVDEHLQLVSDDASHSSDRSISICSSSGRIHLLRENLNSSDDTILRKIDVQEFARLDLLGDIFSSPLMIGGRIFVGCRDDYLHCVTLEMPKQHES* 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2653 1037 CDD A_NRPS 1 469 - -
Amo12g2653 1037 Gene3D - 643 841 IPR015943 GO:0005515
Amo12g2653 1037 Gene3D - 842 1034 IPR015943 GO:0005515
Amo12g2653 1037 SUPERFAMILY ACP-like 489 548 IPR036736 -
Amo12g2653 1037 Pfam AMP-binding enzyme 1 377 IPR000873 -
Amo12g2653 1037 Pfam AMP-binding enzyme C-terminal domain 386 463 IPR025110 -
Amo12g2653 1037 SMART ire1_9 860 890 IPR018391 -
Amo12g2653 1037 SMART ire1_9 690 722 IPR018391 -
Amo12g2653 1037 SMART ire1_9 903 933 IPR018391 -
Amo12g2653 1037 SMART ire1_9 731 764 IPR018391 -
Amo12g2653 1037 ProSitePatterns Phosphopantetheine attachment site. 516 531 IPR006162 -
Amo12g2653 1037 Gene3D - 1 371 IPR042099 -
Amo12g2653 1037 Gene3D - 372 478 IPR045851 -
Amo12g2653 1037 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 683 1033 IPR011047 -
Amo12g2653 1037 PANTHER EBONY 622 1031 - -
Amo12g2653 1037 PANTHER EBONY 1 561 - -
Amo12g2653 1037 Pfam PQQ-like domain 821 984 IPR002372 -
Amo12g2653 1037 ProSitePatterns Putative AMP-binding domain signature. 106 117 IPR020845 -
Amo12g2653 1037 Pfam PQQ-like domain 757 796 IPR002372 -
Amo12g2653 1037 SUPERFAMILY Acetyl-CoA synthetase-like 1 471 - -
Amo12g2653 1037 Gene3D - 489 551 IPR036736 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2653 Amo-Chr12 111401488 111409134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2653 99 483 Monolignol Biosynthesis Gene Families AT4G19010 23.940 1.63e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2653 K00142 - gmx:100820175 1617.82