Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2648 ATGTGTGCTAGGAAAAGTAGAAAGTGGGTGCCTCACATGAACATGCATGAACTACCAAAATTACGACAAGAAACTCCATCAACAAATTCCAAACCAATTCAAAACTTATTGCATTACTTAAAAAGCCTTAAGCCATTCTTCTCAAATCATCATCATATCCAATTTTCAAAGAAAAACATCCTTATTATTATGGAAGATATTCGCTTATTAGTGATAACACTTGTATCATTATCCCTTCTTCTTCAAACCTTTGTTAATGGATATTCTTCAAATGATATTAAACATTGGTGTAGCCAAACACCAAATCCTCAACCATGTGAGTATTTCTTGAGCAATAATCCTAATCACCAAAACAAACCCATCAACCAAAAATCTGATTTTCTCAAGCTTTCATTGCAACTTGCCCAAGAGAGAGCACTCATAGGCCATGCAAACACTGTTTCACTTGGCTCAAAGTGCCGCAACCAACTTGAAAGAGTTGCATGGAATGATTGTGTTGACCTCTATCAACAAACCATTCAAAAGCTCAACAAAACCCTAGACCCTAACACCAAGTGCTCCCAAATTGATGCTCAAACATGGCTTAGCACTGCACTCACAAACCTTGAGACATGCAAAGCTGGCTTCTATGAACTTGGTGTTCAAGATTATGTCCTTCCTCTAATGTCCAACAATGTTACTGAGTTGCTAAGTAACACTTTGGCTCTTAACAACAATGGTGAATCTCATCAAGAGCCAAGTTACAAAAATGGATTCCCAACATGGGTCAAGCCAGGTGATAGAAAATTGCTACAAGCATCTTCTCCGGCATCGCAAGCCAATGTAGTGGTGGCCAAAGACGGATCCGGAAAATACACAACAGTTATGGCAGCCGTAAACGCAGCACCAAAGAGTAGCAGTGGAAGGTATGTGATATATGTGAAGGGAGGGATATACAATGAGCAAGTAGAGATAAAGGCAAATAATATAATGTTGGTGGGAGATGGCATTGGAAAAACCATAATCACCGGCAGCCAAAGTGTGGGAGGAGGCACCACAACCTTCCGTTCTGCCACCGTTGCTGTTACTGGAGATGGATTTATTGCTCAAGGAATCACATTTAGAAACACAGCAGGTGCAGCAAATCATCAAGCTGTTGCATTGCGTTCTGGATCTGACTTATCAGTTTTCTATAAATGTAGTTTCGAAGGTTATCAAGACACATTATATGCTTACTCTGACAGACAATTCTACAGAGAATGTGACATTTATGGCACTGTTGATTTTATCTTTGGTAACGCTGCTGTTGTGTTCCAAAACTGCAACATATATGCAAGAAACCCTCCAAACAAAATCAACACCATCACTGCACATGGCAGAACTGATCCAAACCAAAACACCGGCATTTCCATTCTCAATTGTGTGGTTACAGCTGCATCAGATTTGAAAGCAGTTCAAAGCTCTGTGAAGACATATCTTGGAAGGCCTTGGAAGGAATACTCAAGAACYGTGTTCATGAAGAGTTCTCTTGATAGCTTAATTGATCCAGCAGGTTGGTTGGAATGGAATGGTAACTTTGCATTAACCACATTGTATTATGGAGAGTACATGAACACAGGACTTGGATCTTCAACCGCAAACAGAGTTAAATGGGGAGGTTATCACGTCATAACCAATGCTGCTGAAGCTTCAAAATTCAGTGTTGCAAATTTCATTGCTGGCAACTCATGGCTACCATCCACCCGTGTTCCTTTCACGGCTGAAATGGGTTTATTATTCTCCAATTTTCTCATTGTTCTCTTCTTTCTATCAACTTTTGCTTATGGTTATTCTTCAAATGATGTTAAACATTGGTGTAGCCAAACCCCAAACCCTCAACCATGTGAGTATTTCTTGAGCAACAACCCTAATCACTTTCACAAACCCATTAAGCACAAAGGAGATTTTCTCAAGCTTTCATTGCAACTTGCTCAAGAGAGAGCACTCATAGGGCATGCAAACACTCTTTCACTTCACTCAAAGTGCCACAACCAAGTTGAAAGAGTTGCATGGAATGATTGTGTTAAGCTCTATCAACAAACCATTCATAAGCTCAACAAAATCCTAGATCCTAAAACCAAGTGCTCCAAAGTTGATGCTCAAACATGGCTTAGCACTGCTCTCACAAACCTTGAGACATGCCAAACTGGCTTCTATGAACTTGGTGTTCAAGACTCTCTTCTTCCTCTAATGTCCCACAATAATCTTACTAAGTTGCTAAGCAACCTTTTGGCTCTTAATAACAACGGTGAATCCCATCAAGAGCCAAGTTACAAAGATGGATTCCCAACATGGGTCAAGCCAGGTGATAAAAAATTGCTACAAGCATCTTCTCCAGCATCTCAAGCCAATGTGGTGGTGGCCAAAGACGGATCTGGAAAATACACAACAGTTATGGCAGCCATAAACGCAGCACCAAATAGTAGCAGCAGTGGAAGAAGGTATGTGATATATGTGAAGGCCGGGATTTACAACGAGCATGTTGAAATAGAGGCAAATAATATAATGTTGATCGGAGATGGTATCGGAAAAACCATAATTACCGATCAGCAAAGTGTTGGGGGAGGCAGAACAACTTATAGTTCAGCCACTGTTGGTATTATGGGAGCAGGATGTATTGCTCAAGGAATCACATTTAGGAACACTGCAGGTGCAGAAAATCGGCAAGCTGTTGCATTGCGTTCTGGATCTGACTTATCAGTTTTTTATCGATGCAGTTTTGAAGGTTATCAAGATACATTATTCACTTTCTCTGACAGACAATTCTATAGAGAATGTGACATTTATGGCACTGTTGACTTTATCTTTGGTAATGCTGTTGTGGTGTTTCAAAATTGCAACATATTTGTAAGAAACCATCCAAAAACAATTAACACAATCACTGCACAAGGAAGAACTGATGCAAAACAAAACACTGGAATTTCCATTGTCAATTGTGTGGTTACAGTAGCACCAGATTTGAAAGCAGTTCAAAGCTCTATGAAGGCATATCTTGGAAGGCCATGGCAAAAATATTCAAGAACAGTTTTCATGAAGAGTTATTTTGATAGCTTGATTGTTCCAGCAGGTTGGTTGGAATGGAATGGTGACTTTGCATTAAGTACTTTGTATTATGGAGAATACATGAACACAGGTCCTGGATCTTCAACCACAAACAGAGTTAAATGGGGAGGTTATCATGTCATAACCAATGCTGCTGAAGCTTCAAAGTTCACCGTTTCAAACTTCATTGCTGGCAACTCATGGCTACCATCCACCGGTGTGCCTTTCACCGCTGGTCTCTAG 3303 0.4018 MCARKSRKWVPHMNMHELPKLRQETPSTNSKPIQNLLHYLKSLKPFFSNHHHIQFSKKNILIIMEDIRLLVITLVSLSLLLQTFVNGYSSNDIKHWCSQTPNPQPCEYFLSNNPNHQNKPINQKSDFLKLSLQLAQERALIGHANTVSLGSKCRNQLERVAWNDCVDLYQQTIQKLNKTLDPNTKCSQIDAQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTELLSNTLALNNNGESHQEPSYKNGFPTWVKPGDRKLLQASSPASQANVVVAKDGSGKYTTVMAAVNAAPKSSSGRYVIYVKGGIYNEQVEIKANNIMLVGDGIGKTIITGSQSVGGGTTTFRSATVAVTGDGFIAQGITFRNTAGAANHQAVALRSGSDLSVFYKCSFEGYQDTLYAYSDRQFYRECDIYGTVDFIFGNAAVVFQNCNIYARNPPNKINTITAHGRTDPNQNTGISILNCVVTAASDLKAVQSSVKTYLGRPWKEYSRTVFMKSSLDSLIDPAGWLEWNGNFALTTLYYGEYMNTGLGSSTANRVKWGGYHVITNAAEASKFSVANFIAGNSWLPSTRVPFTAEMGLLFSNFLIVLFFLSTFAYGYSSNDVKHWCSQTPNPQPCEYFLSNNPNHFHKPIKHKGDFLKLSLQLAQERALIGHANTLSLHSKCHNQVERVAWNDCVKLYQQTIHKLNKILDPKTKCSKVDAQTWLSTALTNLETCQTGFYELGVQDSLLPLMSHNNLTKLLSNLLALNNNGESHQEPSYKDGFPTWVKPGDKKLLQASSPASQANVVVAKDGSGKYTTVMAAINAAPNSSSSGRRYVIYVKAGIYNEHVEIEANNIMLIGDGIGKTIITDQQSVGGGRTTYSSATVGIMGAGCIAQGITFRNTAGAENRQAVALRSGSDLSVFYRCSFEGYQDTLFTFSDRQFYRECDIYGTVDFIFGNAVVVFQNCNIFVRNHPKTINTITAQGRTDAKQNTGISIVNCVVTVAPDLKAVQSSMKAYLGRPWQKYSRTVFMKSYFDSLIVPAGWLEWNGDFALSTLYYGEYMNTGPGSSTTNRVKWGGYHVITNAAEASKFTVSNFIAGNSWLPSTGVPFTAGL* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2648 1100 CDD PMEI-like_3 96 239 - -
Amo12g2648 1100 ProSitePatterns Pectinesterase signature 1. 817 836 IPR018040 -
Amo12g2648 1100 PANTHER PECTINESTERASE 68 580 - -
Amo12g2648 1100 PANTHER PECTINESTERASE 68 580 - -
Amo12g2648 1100 PANTHER PECTINESTERASE 584 1099 - -
Amo12g2648 1100 CDD PMEI-like_3 611 744 - -
Amo12g2648 1100 Pfam Pectinesterase 790 1086 IPR000070 GO:0030599|GO:0042545
Amo12g2648 1100 Pfam Pectinesterase 274 568 IPR000070 GO:0030599|GO:0042545
Amo12g2648 1100 Pfam Plant invertase/pectin methylesterase inhibitor 92 236 IPR006501 GO:0004857
Amo12g2648 1100 Pfam Plant invertase/pectin methylesterase inhibitor 607 752 IPR006501 GO:0004857
Amo12g2648 1100 ProSitePatterns Pectinesterase signature 1. 299 318 IPR018040 -
Amo12g2648 1100 TIGRFAM PME_inhib: pectinesterase inhibitor domain 586 755 IPR006501 GO:0004857
Amo12g2648 1100 TIGRFAM PME_inhib: pectinesterase inhibitor domain 71 239 IPR006501 GO:0004857
Amo12g2648 1100 Gene3D Invertase/pectin methylesterase inhibitor family protein 87 239 IPR035513 -
Amo12g2648 1100 Gene3D Invertase/pectin methylesterase inhibitor family protein 603 755 IPR035513 -
Amo12g2648 1100 Gene3D - 269 582 IPR012334 -
Amo12g2648 1100 Gene3D - 785 1100 IPR012334 -
Amo12g2648 1100 SUPERFAMILY Pectin lyase-like 784 1099 IPR011050 -
Amo12g2648 1100 SUPERFAMILY Pectin lyase-like 268 579 IPR011050 -
Amo12g2648 1100 SMART PMEI_2 88 236 IPR006501 GO:0004857
Amo12g2648 1100 SMART PMEI_2 603 752 IPR006501 GO:0004857
Amo12g2648 1100 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 91 239 IPR035513 -
Amo12g2648 1100 ProSitePatterns Pectinesterase signature 2. 934 943 IPR033131 -
Amo12g2648 1100 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Amo12g2648 1100 PANTHER PECTINESTERASE 584 1099 - -
Amo12g2648 1100 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 606 755 IPR035513 -
Amo12g2648 1100 SMART complete 307 485 IPR006633 -
Amo12g2648 1100 SMART complete 825 983 IPR006633 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2648 Amo-Chr12 111313818 111318899 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2648 64 582 Carbohydrate Esterase AT2G45220 65.125 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2648 K01051 - gmx:100783964 864.374