Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2643 ATGTCACCTTTTCATTCCCTTGTAATACTCTTGATTCCTTTCCTACTTTCCTCCATTGTTACTTCATATTCATATAATGACCTTAAACTTTGGTGTGGCCAAACACCTAATCCTCAACCATGTGAGTATCTCTTGAGCAAAAACCCTAATCACTTGCACAAACCCATTAAGCGAAAATCTGATTTTCTCAAGCTTTCATTGCAACTTGCTCAAGAGAGAGCACTCATAGGACATGCAAACACTCTTTCACTTGGATCAAAGTGCCGCAACCAACTTGAAAGAGTTGCATGGAATGATTGTGTAGAGCTCTATCAACAAACCATTCAAAAGCTCAACAAAACCCTAGACCCTAACACCAAATGCTCCCAAGTTGATGCCCAAACATGGCTTAGCACTGCTCTCACAAACCTTGAGACATGCAAAGCTGGCTTCTATGAACTTGGTGTTCAAGACTATGTCCTTCCTCTAATGTCCAACAATGTTACTAAGTTGCTAAGCAACACTTTGGCTCTTAACAACAATGGTGAATCTCATCAAGAACCAAGTTACAAAGATGGATTCCCAACATGGGTCAAGCCCGGTGATAGAAAATTGTTGCAAGCATCTTCTCCGGCTTCTAGGGCTAATGTAGTGGTAGCTAAAGATGGATCTGGAAAATACACCACAGTGAATGCTGCCATAAATGCTGCACCAAAGAATAGCAATGGAAGGTATGTGATATATGTGAAGGGTGGGATATACAATGAGCAAGTTGAAATAAAGACAAAGAATATAATGTTGGTCGGAGATGGTATTGGAAAAACCATAATCACAGGTAGCAAAAGTGTTGGAGGTGGCACTACAACCTTTCGTTCAGCCACAGTTGCGGTTGTTGGAGATGGATTTATTGCTCAAGATATTACATTCAGGAACACCGCTGGTGCAAAAAATCATCAAGCTGTTGCATTGCGTTCTGGATCAGACTTATCAGTTTTCTACAGATGTAGTTTTGAAGGTTATCAAGACACACTATATGTTCATTCCGAGAGACAATTCTACAAGAATTGCAACATTTATGGAACCGTTGACTTTATATTTGGCAACGCTGCTGTTGTGTTCCAAAACTGTAACATATTTGCAAGAAACCCTCCAAACAAAGTAAACACAATCACAGCACAAGGAAGAACCGATCCAAACCAAAACACTGGCATTTCCATTCACGATTGTAGGGTTACAGCTGCTTCAGATTTGAAACCGGTTCAAAGTTCAGTGAGAACTTATCTTGGAAGACCATGGAAAGAGTATTCAAGAACCGTGTTTATGAAGAGTTTTCTTGATGGTTTGGTTCAACCGGCCGGTTGGATGGAATGGAGTGGTAACTTTGCTTTGAACACGCTTTATTATGGAGAGTATATGAATACTGGACCCGGTTCATCGACTTCAAACCGGGTTAAATGGCGTGGTTATCGTGTTATTAAGACTGCTGCTGAAGCATCGAAATTCACGGTTGGGAATTTCATTGCTGGAAACTCATGGTTACCAGCTACCAAAGTGCCTTTCACCTCAAATCTCTAA 1554 0.4073 MSPFHSLVILLIPFLLSSIVTSYSYNDLKLWCGQTPNPQPCEYLLSKNPNHLHKPIKRKSDFLKLSLQLAQERALIGHANTLSLGSKCRNQLERVAWNDCVELYQQTIQKLNKTLDPNTKCSQVDAQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTKLLSNTLALNNNGESHQEPSYKDGFPTWVKPGDRKLLQASSPASRANVVVAKDGSGKYTTVNAAINAAPKNSNGRYVIYVKGGIYNEQVEIKTKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTAGAKNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYKNCNIYGTVDFIFGNAAVVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHDCRVTAASDLKPVQSSVRTYLGRPWKEYSRTVFMKSFLDGLVQPAGWMEWSGNFALNTLYYGEYMNTGPGSSTSNRVKWRGYRVIKTAAEASKFTVGNFIAGNSWLPATKVPFTSNL* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2643 517 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 174 IPR035513 -
Amo12g2643 517 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Amo12g2643 517 Pfam Plant invertase/pectin methylesterase inhibitor 28 171 IPR006501 GO:0004857
Amo12g2643 517 PANTHER PECTINESTERASE 7 515 - -
Amo12g2643 517 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 174 IPR035513 -
Amo12g2643 517 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 174 IPR006501 GO:0004857
Amo12g2643 517 SUPERFAMILY Pectin lyase-like 203 515 IPR011050 -
Amo12g2643 517 Gene3D - 204 517 IPR012334 -
Amo12g2643 517 SMART PMEI_2 23 171 IPR006501 GO:0004857
Amo12g2643 517 SMART complete 242 420 IPR006633 -
Amo12g2643 517 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
Amo12g2643 517 CDD PMEI-like_3 30 174 - -
Amo12g2643 517 PANTHER PECTINESTERASE 7 515 - -
Amo12g2643 517 Pfam Pectinesterase 209 503 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2643 Amo-Chr12 111260963 111263327 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2643 1 517 Carbohydrate Esterase AT2G45220 65.511 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2643 K01051 - gmx:100783428 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2643 12 111260963 111263327 Amo12g2643 12 111260963 111263327 ECH