Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2641 ATGGCAACATCTAAGTTGCTATTAGCAACACTTGTAATTAGTGTACCCTTTCTATTTTGTTCTATAGCATATGGTTACTCATTGAAAGACATAAAATCATGGTGTAGCCAAACACCTTACCCTGAACCATGTGAGTACTATTTGAGCAACCATGCATACAACAAACCCATAAAGAACAAATCGGATTTCCTCAAAGTGTCACTACAATTAGCCATAGAGAGAGCACAAAAGGGTCATGAGAACACAATCTCACTTGGCCCTAAGTGTAGAAATGCACATGAAAAAGCTGCTTGGAATGATTGCATTAAACTCTATGAGTACACAATCAACAAGCTCAACAAAACCATGGATCCTAAAACAAAGTGTGACCAAGTTGATGCACAAACTTGGCTCAGCACTGCCCTAACAAATCTTGAGACATGCAAAGCCGGTTTCTACGACCTAGGAGTACAAGATTACATGCTACCATTGTTGTCCAACAACAATGTTTCATGTTTGCTAAGCAATACACTATCCTTGAACAAGGTGGCTTTTCAACCACCAAGTTACAAAGATGGTTTCCCAACATGGGTCAAGCCGGGTGACCGGAAACTTTTGCAGTCGTCTTCTGCGGCTTCTAAGGCTAATGTGGTGGTGGCCAAAGATGGGTCTGGAAAATACACCACCGTTAGCGCCGCCGTAAACGCTGCACCAAGTGGCAGCAGTAGGTATGTGATATATGTTAAGGCCGGTGTGTATAATGAACAAGTTCAGGTTAAAGCAAAGAATGTTATGTTGGTCGGCGATGGTATCGGAAAAACCGTTATTACCGGTAGCAAGAGCGTCGGAGGGGGAAGCACAACCTTTAGTTCCGCCACTGTTGCTATTACTGGAGATGGATTCATTGCTCAAGATATCACATTCAGAAACACTGCTGGAGCAGCAAATCATCAAGCTGTGGCACTACGTTCTGGATCAGATCTCTCAGTGTTCTACAGATGTGGATTTGAAGGTTATCAAGACACATTATATGTATACTCAGATAGACAATTCTACAGAGAATGTGACATTTATGGAACCGTTGACTTTATCTTTGGTAATGCGGCAACGGTTTTACAAAACTGTAACATTTATGCAAGAAACCCTCCTCAAAAGACAATCACAGTAACTGCTCAAGGTAGAACTGATCCAAACCAAAACACAGGAATCATCATCCATAATTCAAAGATCACAGCTGCCTCAGGCCTAAACCCTAGCTCAGTGAAATCATATCTTGGAAGGCCATGGAAGCAATACTCAAGAACCGTGGTGATGAAGACTTATCTTGATAGTTTGATTAACCCAGCAGGGTGGATGGAATGGAGTGGTAACTTTGCATTGAACACTTTGTATTATGCTGAGTATGCAAATACAGGTCCTGGTTCTTCTACTTCAAATAGGGTTTCATGGAAGGGTTACCATGTCCTTACTAGTGCTTCTCAAGCTTCACCTTTCACTGTTGGAAACTTTCTTGCTGGAAATTCATGGTTGCCAAGCACTGGAGTCCCTTTTACCTCCGGTCTGTGA 1545 0.4214 MATSKLLLATLVISVPFLFCSIAYGYSLKDIKSWCSQTPYPEPCEYYLSNHAYNKPIKNKSDFLKVSLQLAIERAQKGHENTISLGPKCRNAHEKAAWNDCIKLYEYTINKLNKTMDPKTKCDQVDAQTWLSTALTNLETCKAGFYDLGVQDYMLPLLSNNNVSCLLSNTLSLNKVAFQPPSYKDGFPTWVKPGDRKLLQSSSAASKANVVVAKDGSGKYTTVSAAVNAAPSGSSRYVIYVKAGVYNEQVQVKAKNVMLVGDGIGKTVITGSKSVGGGSTTFSSATVAITGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYRCGFEGYQDTLYVYSDRQFYRECDIYGTVDFIFGNAATVLQNCNIYARNPPQKTITVTAQGRTDPNQNTGIIIHNSKITAASGLNPSSVKSYLGRPWKQYSRTVVMKTYLDSLINPAGWMEWSGNFALNTLYYAEYANTGPGSSTSNRVSWKGYHVLTSASQASPFTVGNFLAGNSWLPSTGVPFTSGL* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2641 514 Pfam Pectinesterase 209 500 IPR000070 GO:0030599|GO:0042545
Amo12g2641 514 Pfam Plant invertase/pectin methylesterase inhibitor 30 173 IPR006501 GO:0004857
Amo12g2641 514 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 176 IPR035513 -
Amo12g2641 514 PANTHER PECTINESTERASE 6 513 - -
Amo12g2641 514 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Amo12g2641 514 CDD PMEI-like_3 33 175 - -
Amo12g2641 514 PANTHER PECTINESTERASE 6 513 - -
Amo12g2641 514 Gene3D - 203 514 IPR012334 -
Amo12g2641 514 SUPERFAMILY Pectin lyase-like 203 513 IPR011050 -
Amo12g2641 514 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 176 IPR035513 -
Amo12g2641 514 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 176 IPR006501 GO:0004857
Amo12g2641 514 SMART PMEI_2 26 173 IPR006501 GO:0004857
Amo12g2641 514 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2641 Amo-Chr12 111231508 111235801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2641 1 514 Carbohydrate Esterase AT2G45220 67.118 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2641 K01051 - gmx:100794948 829.32