LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo12g2631	AGGCAGCAATTAGGGTTCCAAATTGGGCGTGCATCTCATCAGAAGAAGAAAACAATGGTGTCGGGTTCAGGGATATGCGCAGCGCGTGTGGTGGTCGACGCGCGGCACCACATGCTCGGTCGTCTTGCGTCGATAGTGGCGAAGGAGCTTCTGAACGGTCAGAAGGTGGTGGTGGTTAGGTGCGAGGAGATCTGCATCTCCGGCGGTCTCGTTAGGCAGAAGATGAAGTACATGCGGTTCCTCCGTAAGAGGATGAACACTAAACCCTCTCATGGCCCCATCCATTTCCGCGCTCCTTCCAAGATCTTCTGGCGCACGGTTCGCGGCATGATTCCTCACAAGACGAAGCGCGGCGAAGCCGCTCTTGCTCGCTTGAAGGTTTTCGAGGGAATCCCTCCTCCTTATGATAAGACGAAGAGGATGGTGATCCCTGATGCTCTCAAGGTTTTGAGGCTTCAGAAGGGGCACAAATTCTGCTTGCTTGGTAGATTGTCATCTGAAGTTGGATGGAATTATTATGATACCATCACGGAATTGGAGAAGAAGAGGAAGGAGAAGGCGCATTTGTTGTACGAGAGAAAGAAGCAGCTGAACAAATTGAGGGTGAAAGCTGAGAAGGTTGCTGAGGAGAAGCTTGGTTCCCAACTTGATATCCTTGCTCCAGTAAAGTACTGA	675	0.5126	RQQLGFQIGRASHQKKKTMVSGSGICAARVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGEAALARLKVFEGIPPPYDKTKRMVIPDALKVLRLQKGHKFCLLGRLSSEVGWNYYDTITELEKKRKEKAHLLYERKKQLNKLRVKAEKVAEEKLGSQLDILAPVKY*	225

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo12g2631	224	Pfam	Ribosomal protein L13	30	133	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Amo12g2631	224	TIGRFAM	L13_A_E: ribosomal protein uL13	30	172	IPR005755	GO:0003735\|GO:0006412\|GO:0015934
	Amo12g2631	224	Gene3D	-	174	224	-	-
	Amo12g2631	224	Hamap	50S ribosomal protein L13 [rplM].	29	153	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Amo12g2631	224	ProSitePatterns	Ribosomal protein L13 signature.	107	130	IPR023563	GO:0003735\|GO:0005840\|GO:0006412
	Amo12g2631	224	SUPERFAMILY	Ribosomal protein L13	30	172	IPR036899	GO:0003735\|GO:0005840\|GO:0006412
	Amo12g2631	224	Gene3D	Ribosomal protein L13	26	172	IPR036899	GO:0003735\|GO:0005840\|GO:0006412
	Amo12g2631	224	CDD	Ribosomal_L13	30	131	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Amo12g2631	224	PANTHER	60S RIBOSOMAL PROTEIN L13A-4	19	224	-	-
	Amo12g2631	224	PANTHER	RIBOSOMAL PROTEIN L13	19	224	IPR005822	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo12g2631	Amo-Chr12	110949026	110950107	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo12g2631	19	224	Cytoplasmic Ribosomal Protein Gene Family	AT5G48760	90.777	1.85e-141	392

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo12g2631	K02872		-	gmx:100499978	396.356

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo12g2631	12	110949026	110950107	Amo12g2631	12	110949026	110950107	ECH