Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2616 ATGAAGGCGATGCCCTTTCCTTCTGAGGAATTTCAAGGGAAGGGAGTGTTGGATTTCTCTTCTTCTTATTGTTCTGCAACAGATCTGTTCTCACTGCTTCACCATCAACAGCAACTTGTTAATAATCATAGTATCCATCAGCCACCACCACCATCACAAGAAGGAAAGTGGAGGAGAAGGGAAGAAGAAGAAGAAGAAGAAGTAGAAGAAGAGAATAAAGGCTATGTGGGTTGCACTGAGCTCACATCTGTTCTTGACTCAAGAAGAAGCCAAAGCCCTCCTTCATCCACCTGCACAATGTCCTCTTCTCTTGGTAGCAGCAACAACAGCACAAGCAAAGGTAGTGCTGCTGGTGGTGGCTGCTCAGCCTCTGCTGCAGCACTAACCTCAGAGAATCCTCCTCCTCCTCCAGAAGGATCCATGGAGAAATGTGGTGGGGCAAGAATGATGGATGACTGGGAGGGTCAAGATCAGTCCATTCTGAGGCTAATCATGGGTGATGTTGAGGACCCTTCTGCTGGTTTGACCAAGCTCTTGCAAACTGGCTCTCGTAATGTTGATTTCGGTTCTTCAGGGTTTGGTGTTGTGGAGCAAGGAGGATTGGTTATGGACCCTTCTATGCCTGGGAATTACCCTGCTTTCCCATTCCTTGGGGCTGAGAATATGGAGAGTCACAATGCAAAGAATGGTTGTGGTGTTTCTGAACCCATGTTTGCTTCCGGTAACAATCCTATGTTGGTGTCCGCGGCTCCGACTTCGGGTGTGTTTGGCTTTCAGCAGCCTGTGTTTGGAACCGTGGATGAGAAGCCTCAGGTTATCAACCCTCAGTTTATGATGAATCATAATCAAGTTCAGTTTTCAGAGAATCCTTCATTCTTTGTGCCATTGACATACCCCCAAATGCAAGAGCAGCATATTGTTTACTCTCAGCAACCGGCGAAGCGTGCGGCGGTCGGGCACAATTATCAGGTGCCGAGATTACCCCTTTTGGATTCGGGGCAGGAGCAATTCGCCAGGAGGCAGCAACAGGCGCAGCTTCCATTGTTTCCTCATCATCTGCAGCATCAGCAGAAGGTGAGTTCAGCCGGAGACGAGGCAAGCAACCAGCTTCAGCAGACTATGTTTGATCAGCTATACAAGACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCTTGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCCCCCATTGGCAAGCCTTTTCAGAGGGCTGCTCTCTACATGAAGGAGGCATTGCAACTACTGCTCCATTCAAACATTCCCAATTTCATGCCTTTCTCGCCCATCGGCTTCATATTCAAGATTGGAGCTTACAAATCATTCTCAGAGATCTCACCTGTTCTCCAGTTTGCAAACTTCACTTCCAATCAAGTCCTCATTGAAGCTGTAGAACGTTTCGATCGAATTCACATTATTGACTTTGATATTGGGTTTGGAGTGCAGTGGTCTTCCTTTATGCAAGAGCTTGCCTTGAGAAATAGCAATGCATCTTCTCTTAAAGTTACTGCCATAGTTTCGCCTTCGAATTGTGACGAGGTTGAGCTGAATTTCACAAGAGAGAATTTAAGTCAGTATGCAAAAGACATCAACTTATCATTCGAGCTCAATATCTTGAACATTGAATCATTGAGCTCCTCTTCCTTTCCACTGGCAAGTCAGTTCTTCGATAGCGAGGCAGTTGCTGTAAATATGCCGCTTTCTTGTTTCACTCATCATCCGTCGCTGGTTCCATCTGTCCTTCATTTTGTCAAGCAGCTTAGGCCAAAAGTGGTGGTTACTTTGGACCGGAATTGTGACCGAATCGATGTGCCACTTCCAACCAAAGTAGTCCATGTTCTTCAATATTACTCAGCCTTGCTCGAATCGCTTGACGCCGTGAATGTGAACCTCGACGTCCTCCAAAAGATCGAGAAGCATTTCATCCAACCATCCATTAGGAATGTGATCACAGGTCACCACCATTACCATTCACAAGAGAAGCTACCTCATTGGAGGAACCTCTTTGTTCAATCTGGATTCTCATCATTCACATTCAGTAACTTCACAGAAGCTCAAGCAGAATGTCTGGTGCAGCGTGCGCCGGTGCGAGGGTTTCAGGTCGAGAGAAACCATTCCTCTCTTGTTCTATGCTGGCAGCGAAAAGACCTGGTCTCCATTTCGAGTTGGAGATGCTAA 2205 0.4689 MKAMPFPSEEFQGKGVLDFSSSYCSATDLFSLLHHQQQLVNNHSIHQPPPPSQEGKWRRREEEEEEEVEEENKGYVGCTELTSVLDSRRSQSPPSSTCTMSSSLGSSNNSTSKGSAAGGGCSASAAALTSENPPPPPEGSMEKCGGARMMDDWEGQDQSILRLIMGDVEDPSAGLTKLLQTGSRNVDFGSSGFGVVEQGGLVMDPSMPGNYPAFPFLGAENMESHNAKNGCGVSEPMFASGNNPMLVSAAPTSGVFGFQQPVFGTVDEKPQVINPQFMMNHNQVQFSENPSFFVPLTYPQMQEQHIVYSQQPAKRAAVGHNYQVPRLPLLDSGQEQFARRQQQAQLPLFPHHLQHQQKVSSAGDEASNQLQQTMFDQLYKTAELIEAGNPVLAQGILARLNHQLSPIGKPFQRAALYMKEALQLLLHSNIPNFMPFSPIGFIFKIGAYKSFSEISPVLQFANFTSNQVLIEAVERFDRIHIIDFDIGFGVQWSSFMQELALRNSNASSLKVTAIVSPSNCDEVELNFTRENLSQYAKDINLSFELNILNIESLSSSSFPLASQFFDSEAVAVNMPLSCFTHHPSLVPSVLHFVKQLRPKVVVTLDRNCDRIDVPLPTKVVHVLQYYSALLESLDAVNVNLDVLQKIEKHFIQPSIRNVITGHHHYHSQEKLPHWRNLFVQSGFSSFTFSNFTEAQAECLVQRAPVRGFQVERNHSSLVLCWQRKDLVSISSWRC* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2616 734 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 72 733 IPR005202 -
Amo12g2616 734 Pfam GRAS domain family 376 733 IPR005202 -
Amo12g2616 734 MobiDBLite consensus disorder prediction 42 148 - -
Amo12g2616 734 PANTHER GRAS FAMILY TRANSCRIPTION REGULATOR 72 733 - -
Amo12g2616 734 ProSiteProfiles GRAS family profile. 365 733 IPR005202 -
Amo12g2616 734 MobiDBLite consensus disorder prediction 83 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2616 Amo-Chr12 110564921 110567993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2616 376 734 GRAS Transcription Factor Family AT4G00150 54.017 8.34e-124 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo12g2616 GRAS 9.7e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2616 - - aip:107625898 1209.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2616 12 110564921 110567993 Amo02g2700 02 83820132 83823208 hybridization