Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2615 ATGCCCAAATTTTCCATACTAGTCTTTCTCCTTCTTCTCTTCACCACCAACACTTTCTCCCTCCAACAAGAAATAGAGCTACTAAAAATGACCCAAACCCAAGTTTCACAAATCATGAACAATTTGTTAGGGAAACTTGGAAATGAAGCCATGCTAGTTGSTGATWATYMSYYACACCAAAATTATTCAAGTACTAGTGTGGCTCTAAGAGATTGTGCTARKCTCTATGAGGAGAGTGAGTATAGGCTTTCTTACATGATGAACTCAATGAATAGTAGCTATTATTATTATGACAATGATGATGCACTTTCTTGGGTTAGTGCTTTGATGACAAACCACAAAACTTGTTTGGATGGATTGAAGGAAAAAGGGTATGTTGGTGCTCATGATGAGGTTTTGGAAAATGGAAACTTGACCATGTTGCTTGATCAAGCTCTTGGTTTGTATGCTAAGAGAAAAGGCAAAGCAAAACCAAAAGGAGCACGAGAGAGAGCATTTTCCAGATCATCACCAAGTAATGGTGGAATAACGTTAGCATCATGGAATCCATCAACATCGAAAGCAGACTTCATAGTATCACAAGATGGTTCAGGAACACACAAAACAATAAGAGATGCAGTGGAAGCACTTGCTTCAAGGGGCAGCAAGAATCAAGAAAGAACAATTATTTATGTTAGAGCAGGTGTGTACCATGAGAAGGTTGTGATTGGATCCAAATTGAATAATGTGATGTTTGTTGGAGATGGCATGGACAGAACCATTGTCACTGGAAGCAGAAGTGCTGCTGATGGTTCTACTCTTGGTTCAGCCACATTTGATATATCTGGAGATGGATTTTGGGCAAGAGACATGACATTTGAAAACACAGCAGGACCAAGAAAGCACCAAGCAGTAGCACTAAAATCAGGTTCAGACTTTTCAGTTTTCTACAGGTGCAGATTCAGAGCATACCAAGACACACTCTATGTCTATGCTAACCGCCAATTCTACCGAGATTGCCAAATCTATGGAACCATAGACTTCATCTTCGGAGATGCCACAGTTGTCATTCAAAACAGTGACATCTATGTGAGAAAACCAATGTCGTCCCAATCAAACTATATAACAGCACAAGGGAGAGAACATCCTACAGAACCAACTGGGATTTCAATAATCAATTGTAAGGTTAGGCCAACAAGTGATTTTGTTACATCTGAGAGTTCAATCAAGACATTCTTGGGTAGGCCTTGGAAGAAGTAYTCTAGGACTGTGGTGATKAAGAGTGATTTGGATGGTTTGATTGATCCWAAAGGGTGGGGGCCATGGGACGGTGAATTTGCAATTAGGACTTTGTATTATGGTGAGTATATGAATTATGGGAGTGGTGCTTCTTTAAGGAATAGGGTTAATTGGCCTGGCTTTCATGTTTTGAATAGTGCTAATGAGGCTTATCCTTTTAGTGTTGGTGAGTTCTTGCAAGGTGGTAGGTGGATTCCAGCTTCTGGGGTTCCATTTTCCTCTGGGATCTAA 1509 0.3996 MPKFSILVFLLLLFTTNTFSLQQEIELLKMTQTQVSQIMNNLLGKLGNEAMLVXDXXXHQNYSSTSVALRDCAXLYEESEYRLSYMMNSMNSSYYYYDNDDALSWVSALMTNHKTCLDGLKEKGYVGAHDEVLENGNLTMLLDQALGLYAKRKGKAKPKGARERAFSRSSPSNGGITLASWNPSTSKADFIVSQDGSGTHKTIRDAVEALASRGSKNQERTIIYVRAGVYHEKVVIGSKLNNVMFVGDGMDRTIVTGSRSAADGSTLGSATFDISGDGFWARDMTFENTAGPRKHQAVALKSGSDFSVFYRCRFRAYQDTLYVYANRQFYRDCQIYGTIDFIFGDATVVIQNSDIYVRKPMSSQSNYITAQGREHPTEPTGISIINCKVRPTSDFVTSESSIKTFLGRPWKKYSRTVVXKSDLDGLIDPKGWGPWDGEFAIRTLYYGEYMNYGSGASLRNRVNWPGFHVLNSANEAYPFSVGEFLQGGRWIPASGVPFSSGI* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2615 502 ProSitePatterns Pectinesterase signature 2. 335 344 IPR033131 -
Amo12g2615 502 Pfam Plant invertase/pectin methylesterase inhibitor 58 147 IPR006501 GO:0004857
Amo12g2615 502 SUPERFAMILY Pectin lyase-like 184 501 IPR011050 -
Amo12g2615 502 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 129 IPR035513 -
Amo12g2615 502 Pfam Pectinesterase 189 487 IPR000070 GO:0030599|GO:0042545
Amo12g2615 502 Gene3D Invertase/pectin methylesterase inhibitor family protein 19 151 IPR035513 -
Amo12g2615 502 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 9 501 - -
Amo12g2615 502 Gene3D - 183 502 IPR012334 -
Amo12g2615 502 PANTHER PECTINESTERASE 9 501 - -
Amo12g2615 502 CDD PMEI-like_4 40 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2615 Amo-Chr12 110537002 110542748 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2615 7 502 Carbohydrate Esterase AT3G60730 47.510 5.05e-172 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2615 K01051 - gmx:100792852 595.89