Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2613 ATGGCAGCAATGCGTTTGCTCTTCAATTTTCTCATTGTTCCCTTCTTTCTATCAACTTTTGTCTATGCCTATTCTTCAAATGATGTTAAACATTGGTGTAGCCAAACACCAAACCCTCAACCATGTGAGTATTTCTTGAGCAACAACCCTAATCACCAAACCAAACCTATTAACCAAAAAAGTGACTTTCTCAAGATTTCATTACAACTTGCCCAAGAGAGAGCTCTCATAGGTCATGCAAATACTCTTTCACTTGGCACAAAGTGCCGCAACCAACTTGAAAGAGTTGCATGGAATGATTGTGTTGACCTCTATCAACAAACCATTCATAAACTCAACAAAACCCTAGACCCTAACACCAAGTGCTCCCAAGTTGATGCTCAAACATGGCTTAGCACTGCTCTCACAAACCTTGAGACATGCAAAGCTGGCTTCTATGAACTTGGTGTTCAAGACTATGTCCTTCCTCTAATGTCCAACAATGTTACTAAGTTGCTAAGCAACACTTTGGCTCTTAACAACAATGGTGAATCTCATCAAGAGCCAAGTTACAAAAATGGATTCCCAACATGGGTCAAGCCTGGTGATAGAAAATTGCTACAAGCATCTTCTCCAGCTTCTCAAGCTAATGTAGTGGTGGCCAAAGACGGATCCGGAAAATACACAACAGTTATGGCAGCCATAAATGCAGCACCAAAGAGTAGCAGTGGAAGGTATGTGATATATGTGAAGGCCGGGATTTACAACGAGCAAGTAGAGATAAAGGCAAATAATATAATGTTAGTGGGAGATGGTATTGGAAAAACCATAATCACGGGCAGCCAAAGTGTGGGAGGAGGCACCACAACCTTCCGTTCCGCCACCGTTGCTGTAACTGGAGATGGATTTATTGGTCAAGGCATGACATTTAGGAACACAGCAGGTGCAGCAAATCATCAAGCTGTTGCATTGCGTTCAGGATCAGACTTATCAGTTTTCTATCAATGCAGTTTCGAAGGTTATCAAGACACATTATATGTTTATTCTGATAGACAATTCTACAAAGAATGTGATATTTATGGCACTGTTGACTTTATCTTTGGTAATGCTGCTGTTGTCTTCCAAAACTGTAATCTATATGCAAGAAACCCTCCTAACAAAATTAACACCATCACTGCACAAGGAAGAACCGATCCAAACCAAAACACTGGAATTTCCATTCACAATTGTGTGGTTACAGCTGCATCAGATTTGAAAGCAGTGCAGAGCTCAGTTAAAACTTATCTTGGAAGGCCATGGCAACAATATTCAAGAACCGTGTTCATGAAGAGTTCTCTTGATAGCTTGATTGATCCAGCAGGTTGGTTGGAATGGAATGGTAACTTTGCATTAACCACATTGTATTATGGAGAGTACATGAACACAGGACTTGGATCTTCAACCGCAAACAGAGTTAAATGGGGAGGTTATCATGTTATTACCAGTGCTGCTGAAGCTTCAAAATTCAGTGTTGCAAATTTCATTGCTGGCAACTCATGGCTACCTTCCACTCGTATTCCTTTCACAGCTGGTCTTTAA 1557 0.4085 MAAMRLLFNFLIVPFFLSTFVYAYSSNDVKHWCSQTPNPQPCEYFLSNNPNHQTKPINQKSDFLKISLQLAQERALIGHANTLSLGTKCRNQLERVAWNDCVDLYQQTIHKLNKTLDPNTKCSQVDAQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTKLLSNTLALNNNGESHQEPSYKNGFPTWVKPGDRKLLQASSPASQANVVVAKDGSGKYTTVMAAINAAPKSSSGRYVIYVKAGIYNEQVEIKANNIMLVGDGIGKTIITGSQSVGGGTTTFRSATVAVTGDGFIGQGMTFRNTAGAANHQAVALRSGSDLSVFYQCSFEGYQDTLYVYSDRQFYKECDIYGTVDFIFGNAAVVFQNCNLYARNPPNKINTITAQGRTDPNQNTGISIHNCVVTAASDLKAVQSSVKTYLGRPWQQYSRTVFMKSSLDSLIDPAGWLEWNGNFALTTLYYGEYMNTGLGSSTANRVKWGGYHVITSAAEASKFSVANFIAGNSWLPSTRIPFTAGL* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2613 518 Pfam Plant invertase/pectin methylesterase inhibitor 28 172 IPR006501 GO:0004857
Amo12g2613 518 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
Amo12g2613 518 SMART complete 243 421 IPR006633 -
Amo12g2613 518 CDD PMEI-like_3 32 175 - -
Amo12g2613 518 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 175 IPR006501 GO:0004857
Amo12g2613 518 PANTHER PECTINESTERASE 5 517 - -
Amo12g2613 518 Gene3D - 205 518 IPR012334 -
Amo12g2613 518 PANTHER PECTINESTERASE 5 517 - -
Amo12g2613 518 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 175 IPR035513 -
Amo12g2613 518 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 175 IPR035513 -
Amo12g2613 518 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Amo12g2613 518 Pfam Pectinesterase 210 504 IPR000070 GO:0030599|GO:0042545
Amo12g2613 518 SMART PMEI_2 24 172 IPR006501 GO:0004857
Amo12g2613 518 SUPERFAMILY Pectin lyase-like 204 517 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2613 Amo-Chr12 110484935 110486689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2613 1 518 Carbohydrate Esterase AT2G45220 65.830 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2613 K01051 - gmx:100783428 873.618