Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2588 ATGAATCGTTTGCTACAAGACATCGGAAGAGAAATGTATATGAAGGAATCATCGATTGAGCCTCAGCAAAGGCCGTATGATGTATTCTTGAGCTTTCGAGGCAAAGAAACTCGCTCAAAGTTCATCTCACATCTTTATGCATCTCTTGAAAACGCTGGTATCTATGTTTTCAAGGACGAAAACGGGCTAGCAAGAGGGGAAAATCTCTCAATCTCGCTTCTGAAAGCAATTGGAGAGTCTAAAACTTATATCATTATTTTGTCACCAAATTATGCATTTTCAAGATGGTGTTTGCAAGAGTTGGAAGACATCATGATATKTTGTAAAAAYAAAACTCAAAAGGTGCTGCCAGTATTCTACCATATAGATCCCTCGGAAGTGCGAAATCAGACTGGTAAGTTTGGACAAGCTTTTGATAATCTTATGAAAAGATACCCGGATAAAATAAAAGGCAAGGAGCAGAGTTGGAGGAAAGCACTCCGTGAAGTTGGRTGCATTGCAGGGCTTGTCATCCGAAAATCCAAGAATGAAAGTRRGGATATTAAGAACATTGTTGAACAAGTTACTCATATGCTGGAAATGAAGGAATTGTTCGTTGCTAATCATCCCGTAGGAATTGAATCTCGTGTTGAAGAGGTGATTCAACTATTAAAAGACCAGGAACAAGAAAATCCTCTACTACTTGGTATATGGGGCATGGGAGGGAGTGGTAAAACAACCATTGCCAAAGCGGTTTATAATAAAATTTTCCGTGAGTTTGAAGGTCGGTGTTTCCTCCTAAATATAAGAGAAGTTTGGGATCAAGATAATGGAATTCTTCATTTACAACAACAACTTCTTTCTGCTATCTACAAGACAACGAAAATAAAGATTGAAAACACTGAATCTGGAAAATCAATATTAGAGAGAAGACTTGGCCAGAAAAGGATACTTCTTGTACTTGATGATGTGGACAAATTGGAGCAGCTAAATTCTTTAGCTGCAAGTCATAAATGGTTCTGTCCTGGGAGCACAATAATCATCACAACAAGAGATGAACATCTTCTTCGTTGTCTTAGAGTTGAYAAGTTATATAGTATGAAAGAGTTAAATGACAAAGAATCCATGGAACTTTTTAGCTGGCATGCATTCAAAGAACCATGTCCAAAAGAAGAGTTTGCTTCACTTGCTAATGAAGTTGTTTCATATTGTGAGAGATTGCCACTGGCTCTTGAGGTAATTGGGTCACATCTGTTTAATAGGAACGTATATGAATGGAGGAGTGTTTTGAATAAACTCAAAACYATTCCAAACAATGATGTACAGAAGAAGCTTAAAATAAGTTTTGATGGTCTAAGTGATGATAGGGATAGAGAAATATTTCTTGATGTAGCATTTTTCTTTATTGGAATGCACAAAAATGATGTAATTGATATATTAAATGGCTGTGGGCATTTTGCTGAAATTGGAATAAAAGTTCTTACGGAACGATGCCTTATTACTGTGGACACTAAGAGGAAACTTGGCATGCATGGTTTGCTGCGAGACATGGGAAGAGAAATTATTCGCGAGAGTTTGCCAATGAAACCTGAGGAACGCAGTAGGTTGTGGAATCCAGATGAAGTGCTTAATGTATTATCAAAAGACATGGGAACAAAAGCTATTGAGGGACTTGCTTTGAACCTGCCAAAGTCATTGGATCCAACTCAGTTAAAGACAGAAGCATTTAAGGAGATGAAGAGACTGAGATTGCTTCAGTTTGCAAATGTGCAACTTGTTGGAGACTTTAAATACCTTTCAACAGATCTTCGATGGTTGTGCTGGCATGAATGTCCTTCAGAATATACAACTGCAAACTTTGATCAAGGAAATTTAGTTGCCATTGACTTCAAATATAGCAAACTCGACCTAGTATGGAAGATGGGTCAGATGATGAAGAATCTAAAATTTCTCAATCTTAGTCATTCTCAACATTTGACACAAACTCCTGACTTTTCAAATATGCCCAATCTTGAAAAGTTAATACTCAAATATTGCCCAAAGTTGACTTCGGTTTCTCATACCATTGAACATCTCAAGCAAGTTCTTCTAATCAATTTGAAAGGGTGTTCACGGCTTCGTGTACTTCCAAGAAGCATCTACAAGTTGAGATCTCTCAAAACTCTCATTCTTTCAGGATGTTCATTGATTGATAAGCTAGAGGAAGACATAGAACAGATGGAATCATTGGCAACTTTGATGGCAGATAAAACTGCCATAACACAAGTGCCTCATGCACTACTAAGATTAAAGAGCATTGTGTATATTTCTTTGTGCGACTTTGAAGGATTATCGCGCAATGTGTTTCCTTCAATCATTTGGTCATGGACCTCTCCAACAAATAATTTCTCACCCCAAGTGCAAACATTTTTGGACTTGTCAAATATTGTTTCCTTAATAGTTCCAAATAGAAAGTCTCAAGGCCTATCATCCATCATCAGAGGGCTTCCACAGGTTCAGAATGTTGGGCTGGAGTGTGGCTCACAACTTCAAATAGCAGATGTAGCTTCTGATACTTTTAAGGTCACAAACTGCAATGAAATGATAGTAACATCAAGTGCATCAAATGTCTCAAAAAGGAGTACCTTATCATTAGCTGGTTGTTGCAGCAAACATGACATTATTGAAGCTGAGATTTCCTTGAATTTAATTTTAATCCAAATGGGAATGAGTTGTGCTGTCACAGAGGTACTTAGAGAGAATATTTTTCAGAAATTTAGTGCCAGAGTACCTGGAGATTGTTTGCTTCCTGGCAACAAGAATCCTGATTGGTTAGCATACAGTAGCAAAGATTCTTCTGTAACTTTCCATGTCCCTCAAGTGAATGGGCGTAAGTTAAAGACAGTGTTGTTGTGTATAGTCTATTCTTCTTCCCCAAACAATGTACCGTCAGAAGCCCATATTGTCAAAAATCTGTTTATCATAAATCACACAAAAACCACCCCTTATGTCTATGATGGAGATACACTGGCTTCACTTAAAGATGAGGAGTGGCAGAAGGTAACATCAAACCTTGAAGCTGGTGACAAAGTGCAGATTGTTGTTGTTGCGGGGTTAGGATTCACAGTGAAGAAGATAGCAGTTTATCTCGTATATGCAGATCAACAAGCTGAAGGTATTGTTTGTGCTGACGATATGGTAGCATATGCAAATTTCACTGTTCATGGTGGAGATAACAATAAAAATTTGAACTCACTTGGAAAACGAAAATTCCAGAGAGTATGA 3243 0.3762 MNRLLQDIGREMYMKESSIEPQQRPYDVFLSFRGKETRSKFISHLYASLENAGIYVFKDENGLARGENLSISLLKAIGESKTYIIILSPNYAFSRWCLQELEDIMIXCKNKTQKVLPVFYHIDPSEVRNQTGKFGQAFDNLMKRYPDKIKGKEQSWRKALREVGCIAGLVIRKSKNESXDIKNIVEQVTHMLEMKELFVANHPVGIESRVEEVIQLLKDQEQENPLLLGIWGMGGSGKTTIAKAVYNKIFREFEGRCFLLNIREVWDQDNGILHLQQQLLSAIYKTTKIKIENTESGKSILERRLGQKRILLVLDDVDKLEQLNSLAASHKWFCPGSTIIITTRDEHLLRCLRVDKLYSMKELNDKESMELFSWHAFKEPCPKEEFASLANEVVSYCERLPLALEVIGSHLFNRNVYEWRSVLNKLKTIPNNDVQKKLKISFDGLSDDRDREIFLDVAFFFIGMHKNDVIDILNGCGHFAEIGIKVLTERCLITVDTKRKLGMHGLLRDMGREIIRESLPMKPEERSRLWNPDEVLNVLSKDMGTKAIEGLALNLPKSLDPTQLKTEAFKEMKRLRLLQFANVQLVGDFKYLSTDLRWLCWHECPSEYTTANFDQGNLVAIDFKYSKLDLVWKMGQMMKNLKFLNLSHSQHLTQTPDFSNMPNLEKLILKYCPKLTSVSHTIEHLKQVLLINLKGCSRLRVLPRSIYKLRSLKTLILSGCSLIDKLEEDIEQMESLATLMADKTAITQVPHALLRLKSIVYISLCDFEGLSRNVFPSIIWSWTSPTNNFSPQVQTFLDLSNIVSLIVPNRKSQGLSSIIRGLPQVQNVGLECGSQLQIADVASDTFKVTNCNEMIVTSSASNVSKRSTLSLAGCCSKHDIIEAEISLNLILIQMGMSCAVTEVLRENIFQKFSARVPGDCLLPGNKNPDWLAYSSKDSSVTFHVPQVNGRKLKTVLLCIVYSSSPNNVPSEAHIVKNLFIINHTKTTPYVYDGDTLASLKDEEWQKVTSNLEAGDKVQIVVVAGLGFTVKKIAVYLVYADQQAEGIVCADDMVAYANFTVHGGDNNKNLNSLGKRKFQRV* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2588 1080 PRINTS Disease resistance protein signature 397 411 - -
Amo12g2588 1080 PRINTS Disease resistance protein signature 707 723 - -
Amo12g2588 1080 PRINTS Disease resistance protein signature 227 242 - -
Amo12g2588 1080 PRINTS Disease resistance protein signature 304 318 - -
Amo12g2588 1080 Pfam NB-ARC domain 207 436 IPR002182 GO:0043531
Amo12g2588 1080 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 33 1037 IPR044974 GO:0006952
Amo12g2588 1080 Gene3D - 23 188 IPR035897 -
Amo12g2588 1080 Gene3D - 189 357 IPR027417 -
Amo12g2588 1080 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 33 1037 - -
Amo12g2588 1080 SMART till_3 25 166 IPR000157 GO:0007165
Amo12g2588 1080 SUPERFAMILY "Winged helix" DNA-binding domain 433 539 IPR036390 -
Amo12g2588 1080 ProSiteProfiles TIR domain profile. 24 192 IPR000157 GO:0007165
Amo12g2588 1080 SMART AAA_5 224 359 IPR003593 -
Amo12g2588 1080 Gene3D Ribonuclease Inhibitor 552 772 IPR032675 -
Amo12g2588 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 456 IPR027417 -
Amo12g2588 1080 Coils Coil 723 743 - -
Amo12g2588 1080 Gene3D - 362 446 IPR042197 -
Amo12g2588 1080 SUPERFAMILY L domain-like 563 874 - -
Amo12g2588 1080 Pfam TIR domain 26 192 IPR000157 GO:0007165
Amo12g2588 1080 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 168 IPR035897 -
Amo12g2588 1080 CDD AAA 204 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2588 Amo-Chr12 109934327 109940781 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2588 24 780 WRKY Transcription Factor Family AT4G12020 29.706 5.58e-75 270