Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2583 ATGATCGACTTCATGAGATTGGAGTTAATCATATATAGAGTGAAAGAAATGGACTACAACGAATGTGTTGAGCTTTTTAGTCGGAGCGCATTCAACAAAGCCACTCCTGAAAGAAGTTTTTCTGGTCTTATTAATTATGCAATTGAATATTCTGATGGACTGCCACTGGCTCTTGTGGGTGTTGGCTCTGCTGTATCTGAAAAAAGTATAGAAGAGTGGGAGAATGTGTTGGACAGCTTCAAAAGATTCCCCTCTCTAGATGTATGGCAGGTTTTAAAAGAAAACATAGATTCTGTTGGATATGAAGAAAAGAAAATATTTCTTGAACTAGCTTATTTGAGACATATCTTTATTGGAATGAATCGAAATGATATAAGTCAGATATTACAAGAAGCTGGACGTAATGCCGCACCAAGAGAAATTAAAGGACTTGAAGAGCATAGTCTTGTGTGGTTTGACGAGGACAAGCTTTGCATGAATCGTTTGCTACAAGACATCGGAAGAGAAATGTATATGAAGGAATCATTGATTGAGCCTCAGCAAAGGCCATATGATGTATTCTTGAGCTTTCGAGGCAAAGAAACTCGCTCAAAGTTCATCTCACATCTTTATGCATCTCTTGAAAATGCTGGTATCTATGTTTTCAAGGATGAAGACGGGCTAGCAAGAGGGGAAAATCTCTCAATCTCGCTTCTGAAAGCAATTGGAGAGTCTAAAACTTCTATCATTATTTTGTCACCAAATTATGCATTTTCAAGATGGTGTTTGCAAGAGTTGGAAGACATCATGATATGTTGTAGAAACAAAACTCAAAAGGTGCTGCCAGTATTCTACCATATAGATCCCTCAGAAGTGCGAAATCAAACTGGTAAGTTTGGACAAGCTTTTGATAACCTTATGAAAAGATATCCGGATAAAATAAAAGGCAAGGAGCAGAGTTGGAGGAAAGCACTCCGTGAAGTCGGGTGTATTGCRGGGTTTGTCATCCGAAAATCCAGGAATGAAAGTGAGGATATTAAGAACATTGTTGAACATATTACTCATATGCTGGACATGAAGGAACTGTTTGTTGCWAATCATCCGGTAGGAGTTGAATCTCGTGTTGAAGAGGTGATTGAAMTGTTAAAAGACCAGCAGCAAGAAAATCCTCTACTACTTGGTATATGGGGCATGGGAGGGAGTGGTAAAACAACCATTAGCAAAGCGATTTATAATAAACTTTTCCGCGAGTTTGAAGGTCGGTGCTTCCTCCTAAATATAAGAGAAGTTTGGGATCAAGATAATGGAATTCTTTATTTACAACAGCAACTTCTTTCTTCTATYTTYARGACAACGAAAATAAAGGTAGAAAACATTGAATCTGGAAAGTCAATATTGGAAAAAAGACTTGGCCAGAAAAAGATTCTTCTTGTACTTGATGATGTGGACAAATTGGAGCAGCTAAATTCTTTAGCTGCAAGCCGTGAATGGTTCTGTCCCGGTAGCATAATAATCATCACAACAAGAGACGAGCATCTTCTACGTTGTCTTAGAATTGACAAGTTATATAGTATGAAAGAGTTAAATGACAAAGAATCCATTGAACTTTTTAGCTGGCATGCATTCAAAGAACCGTGTCCAAAAGAAGAGTTTGCTTCACTTGCTAATGAAGTTGTTTCATATTGTGAGAGATTGCCACTGGCTCTTGAGGTAATTGGGTCACATCTGTTTAATAGGAAAGTATATGAATGGAGGAGTGTTTTGAATAAACTCAAAACTATTCCAAACAATGATGTACAGAAGAAGCTTAAAATAAGTTTTGATGGTCTAAGTGATGATAGGGATAGAGAAATATTTCTTGATGTAGCATTTTTCTTTATTGGAATGGACAAAAATGATGTGATTGATATATTAAATGGCTGCGGGCATTCAGCTGAAATTGGAACGAATGTTCTTATGGAACGATGCCTTATTACTGTGGACACCAAGGGAAAACTTGGCATGCATGGTTTGCTGCGAGACATGGGAAGAGAAGTTATTCGCGAGAGTTTGCCGATGAAACCTGAGGAACGTAGTAGGTTGCGGAATCCAGTTGAGGTGCTTAATGTATTATCAAAAGACATGGGAACAAAAGCTATTGAGGGACTTGCTTTGAACCTGTCAAAGTCACTGAATCCAACCCACTTAAAGACAGAAGCATTTAAGGAGATGAAGAGACTAAGATTGCTTCAGTTTGCGAATGTGCAACTTGTTGGAGACTTTAAATACCTTTCAACAGATCTTCGATGGTTGTGCTGGCATGAATGTCCTTCAGAATATACAACTGCAAACTTTTATCAAGGAAATTTAGTTGCCATTGACTTCAAATATAGCAAACTCGACCTAGTATGGAAGAAGGGTCAGATGATGAAGAATCTAAAAATTCTCAATCTTAGTCATTCTCAACACTTGACACAAACTCCTGACTTTTCAAATATGCCCAATCTTGAAAAGTTAATACTCAAATATTGCCCAAAGTTGACTTCGGTTTCTCATAGCATTGAACATCTCAAGCAAGTTTTTCTAATCAATTTGAAAGGGTGTTCAGGGCTTCGTGTACTTCCAAGAAGCATCTACAAGTTGAAATCTCTCAAAACTCTCATTCTTTCAGGATGTTCATTGATTGATAAGCTAGAGGAGGACATAGAACAGATGGAATCATTGGCAACTTTGATGGCAGATAAAACTGCCATAACACAAGTGCCTCATGCACTACTAAGATTAAAGAGCATTGTGTATATTTCTTTGTGCGACTTTGAAGGATTATCGCGCAATGTGTTTCCTTCAATCATTTGGTCATGGACCTCTCCAACAAATAATTTCTCACCCCAAGTGCAAACATTTTTGGACTTGTCAAATATTGTTTCCTTAATAGTTCCAAATAGAAATTCTCAAGGCCTATCATCCATCATCAGAGGGCTTCCACTGGTTCAGAATGTTGGGCTGGAGTGTGGCTCACAACTTCAAATAGCAGATGTAGCTTCTGATACTTTTAAGGTCACAAACTGCAATGAAATGATAGTAACATCAAGTGCATCAAATGTCTCAAAAAGGAGTACCTTATTATTAGCTGGTTGTTGCAGCAAACATGACATTATTGAAGCTGAAATTTCCTTGAATTTAATTTTAATCCAAATGGGAATGAGTTGTGCTGTCACAGAGGTACTTAGAGAGAATATTTTTCAGAAATTTAGTGCCAGAGTACCTCGAGATTGTTTGCTTCCTGGCAACAAGAATCCTGATTGGTTAGCATACAGTAGCGAAGATTCTTCTGTAACTTTCCATTTCCCTCAAGTGAATGGGCGTAAGTTAAAGACAGTGTTGTTGTGTATAGTCTATTCTTCTTCCCCAAACAATGTACCGTCAGAAGCCCATATTTTCAAAAATCTGTTTATCATAAATCACACAAAAACCACCCCTTATGTCTATGATGGAGATACACTGGCTTCACTTAAAGATGAGGAGTGGCAGAAGGTAACATCAATCCTTGAAGCCGGTGACAAAGTGCAGATTGTTGTTGTTGCGGGGTTAGGATTCACAGTGAAGAAGACAGTGGTTTATCTCGTATATGCAGATCAACAAGCTGAAGAAAAATTTGAACTCGCTTGGAAAACGAAAATTCCAGAGAGTATGATCATCAAATAG 3663 0.3781 MIDFMRLELIIYRVKEMDYNECVELFSRSAFNKATPERSFSGLINYAIEYSDGLPLALVGVGSAVSEKSIEEWENVLDSFKRFPSLDVWQVLKENIDSVGYEEKKIFLELAYLRHIFIGMNRNDISQILQEAGRNAAPREIKGLEEHSLVWFDEDKLCMNRLLQDIGREMYMKESLIEPQQRPYDVFLSFRGKETRSKFISHLYASLENAGIYVFKDEDGLARGENLSISLLKAIGESKTSIIILSPNYAFSRWCLQELEDIMICCRNKTQKVLPVFYHIDPSEVRNQTGKFGQAFDNLMKRYPDKIKGKEQSWRKALREVGCIAGFVIRKSRNESEDIKNIVEHITHMLDMKELFVANHPVGVESRVEEVIEXLKDQQQENPLLLGIWGMGGSGKTTISKAIYNKLFREFEGRCFLLNIREVWDQDNGILYLQQQLLSSIFXTTKIKVENIESGKSILEKRLGQKKILLVLDDVDKLEQLNSLAASREWFCPGSIIIITTRDEHLLRCLRIDKLYSMKELNDKESIELFSWHAFKEPCPKEEFASLANEVVSYCERLPLALEVIGSHLFNRKVYEWRSVLNKLKTIPNNDVQKKLKISFDGLSDDRDREIFLDVAFFFIGMDKNDVIDILNGCGHSAEIGTNVLMERCLITVDTKGKLGMHGLLRDMGREVIRESLPMKPEERSRLRNPVEVLNVLSKDMGTKAIEGLALNLSKSLNPTHLKTEAFKEMKRLRLLQFANVQLVGDFKYLSTDLRWLCWHECPSEYTTANFYQGNLVAIDFKYSKLDLVWKKGQMMKNLKILNLSHSQHLTQTPDFSNMPNLEKLILKYCPKLTSVSHSIEHLKQVFLINLKGCSGLRVLPRSIYKLKSLKTLILSGCSLIDKLEEDIEQMESLATLMADKTAITQVPHALLRLKSIVYISLCDFEGLSRNVFPSIIWSWTSPTNNFSPQVQTFLDLSNIVSLIVPNRNSQGLSSIIRGLPLVQNVGLECGSQLQIADVASDTFKVTNCNEMIVTSSASNVSKRSTLLLAGCCSKHDIIEAEISLNLILIQMGMSCAVTEVLRENIFQKFSARVPRDCLLPGNKNPDWLAYSSEDSSVTFHFPQVNGRKLKTVLLCIVYSSSPNNVPSEAHIFKNLFIINHTKTTPYVYDGDTLASLKDEEWQKVTSILEAGDKVQIVVVAGLGFTVKKTVVYLVYADQQAEEKFELAWKTKIPESMIIK* 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2583 1220 ProSiteProfiles TIR domain profile. 182 350 IPR000157 GO:0007165
Amo12g2583 1220 Gene3D Ribonuclease Inhibitor 700 933 IPR032675 -
Amo12g2583 1220 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 193 1194 IPR044974 GO:0006952
Amo12g2583 1220 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 182 IPR044974 GO:0006952
Amo12g2583 1220 Gene3D - 17 102 IPR042197 -
Amo12g2583 1220 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 193 1194 - -
Amo12g2583 1220 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 13 182 - -
Amo12g2583 1220 SMART till_3 183 324 IPR000157 GO:0007165
Amo12g2583 1220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 109 IPR027417 -
Amo12g2583 1220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 614 IPR027417 -
Amo12g2583 1220 Gene3D - 348 513 IPR027417 -
Amo12g2583 1220 Gene3D - 181 347 IPR035897 -
Amo12g2583 1220 Pfam TIR domain 184 349 IPR000157 GO:0007165
Amo12g2583 1220 Gene3D - 520 604 IPR042197 -
Amo12g2583 1220 SUPERFAMILY Toll/Interleukin receptor TIR domain 179 326 IPR035897 -
Amo12g2583 1220 SUPERFAMILY "Winged helix" DNA-binding domain 591 676 IPR036390 -
Amo12g2583 1220 CDD AAA 362 504 - -
Amo12g2583 1220 PRINTS Disease resistance protein signature 462 476 - -
Amo12g2583 1220 PRINTS Disease resistance protein signature 385 400 - -
Amo12g2583 1220 PRINTS Disease resistance protein signature 555 569 - -
Amo12g2583 1220 PRINTS Disease resistance protein signature 865 881 - -
Amo12g2583 1220 SMART AAA_5 382 517 IPR003593 -
Amo12g2583 1220 SUPERFAMILY L domain-like 719 991 - -
Amo12g2583 1220 Coils Coil 881 901 - -
Amo12g2583 1220 Pfam NB-ARC domain 13 86 IPR002182 GO:0043531
Amo12g2583 1220 Pfam NB-ARC domain 365 594 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2583 Amo-Chr12 109909760 109915394 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2583 182 938 WRKY Transcription Factor Family AT4G12020 29.374 1.24e-69 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2583 - - ahf:112727920 2338.53