Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2557 ATGAAGGTTCACACGTTTAATGTTGTAGTTCTTTACTGTATGCTCTTAATATGCACTTGTTATGGCTTCAACCCCAAACTATCGTTCTATAATTCTTCCAAAGTTGATGCAAATGCAGAACAATGGCAACCAGCATCAGCTACATGGTATGGACCGCCAGATGGCGCTGGAACAGATGGTGGTGCTTGTGGATATGGTAGTAGTGTGGGGAATCCTCCACTCTCTAAATTGGTATCAGCTGGTGGCCCTAATATTTTCAACAATGGCGAAGGATGTGGCGCTTGTTATGAGGTGAAATGCACAGAAAATGAAGCATGCTCTGGTGAAACAGTGACAGTGATGATATCAGATCAATGCCCTGGATGTCCAGCCATTCATTTCGATCTCAGTGGCTTTGCTTTTGTATTCACCATAGATAATGGGGCAAACCAATACTACTTTGCAACCGAAATTGAATATGAAAACGGGGATGGAAATCTTGTGGATGTAAAATTGAAGCAAGCAAATAAAGATTCATGGATTCCAATGAAACGTTTATGGGGTGCAAGATGGGTTCTCAACCTTGGTTCTTTAATGCAACCTCCATTTTCTCTTGAGCTCACTGAGACTTCTGCCACTGGCTCCAGCAAGACCATTGAAGCTAACAATGTTATCCCTGATGGTTGGCAACCTGGCCAATTAGACTACTAG 690 0.4261 MKVHTFNVVVLYCMLLICTCYGFNPKLSFYNSSKVDANAEQWQPASATWYGPPDGAGTDGGACGYGSSVGNPPLSKLVSAGGPNIFNNGEGCGACYEVKCTENEACSGETVTVMISDQCPGCPAIHFDLSGFAFVFTIDNGANQYYFATEIEYENGDGNLVDVKLKQANKDSWIPMKRLWGARWVLNLGSLMQPPFSLELTETSATGSSKTIEANNVIPDGWQPGQLDY* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2557 229 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Amo12g2557 229 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Amo12g2557 229 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Amo12g2557 229 Pfam Lytic transglycolase 79 134 IPR009009 -
Amo12g2557 229 SUPERFAMILY PHL pollen allergen 135 226 IPR036749 -
Amo12g2557 229 SMART dpbb_1 78 145 IPR007112 -
Amo12g2557 229 Pfam Expansin C-terminal domain 136 219 IPR007117 -
Amo12g2557 229 PANTHER EXPANSIN-LIKE PROTEIN B1 135 227 - -
Amo12g2557 229 PANTHER EXPANSIN-LIKE PROTEIN B1 7 134 - -
Amo12g2557 229 PANTHER EXPANSIN-B3 135 227 - -
Amo12g2557 229 SUPERFAMILY Barwin-like endoglucanases 38 135 IPR036908 -
Amo12g2557 229 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 145 229 IPR007117 -
Amo12g2557 229 PANTHER EXPANSIN-B3 7 134 - -
Amo12g2557 229 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 168 IPR007112 -
Amo12g2557 229 Gene3D - 27 155 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2557 Amo-Chr12 109368528 109371928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2557 23 227 Expansin Gene Family AT1G65680 43.388 7.67e-64 198
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2557 12 109368528 109371928 Amo12g2557 12 109368528 109371928 ECH