Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2556 ATGAAGGTTCACACATGTACTCTTGTAGTCCTTTGTTCTATGCTTTTAAGCACTACTTGCTATTGCATCAACCCCAAATTTTTCAATCCTTCCAAAGTTGCAAATGATGAGAAACCATGGAACCAAACACAAGCTACATGGTATGGAGCCCCCGATGGTGCTGGATCAGATAGTGGTGCATGTAATTATGGTAAAACTGTAGAGAGTCCTCCGATCTCTAAATTAACCGTGGCGGCTGGTAATTTTATTTTTCGCAAGGGCTATGGATGTGGTTCTTGTTATGAGGTGAAATGCACAGATAATGCAGCATGTTCAGGAAAGTCCGTGACGGTGGTGGTAAGTGATGAATGCTCATCGTGTTCAGGATACCATTTCAATCTCAGTGGCGCCGCTTTTGCTTCCATCGCAAATCCAGGTCAACAAGATACTCTTCGCAAACTTGGACAAGTCAACCTTCAATACAGAAGGGTTTCATGCTCATTTGGGAATTTTGTAGCAGTGAGGATCGGTGAAAACTCTAGACCACCAACTTACATGGAAGCATCAATCGAATATGTAAATGGAGATGCAGAATACATTGATTTAGAAGTTCGTGATCAAAGTTTTCTTACCGTTTCTCGTGTGGGGGGTGCAACATGGAGTTTCTTTTTCGCCGGTTATAATTTGCAACCTCCAATGACTTTAACGCTCACTCAACGTTATTCCAATGGCACCAAAGGAAATACCATTCAACTTCCTAATATCATCCCAATTGATTGGAAGATTGGTCAAGTTTATCAATCAAAGACAAATTTCTAG 798 0.4123 MKVHTCTLVVLCSMLLSTTCYCINPKFFNPSKVANDEKPWNQTQATWYGAPDGAGSDSGACNYGKTVESPPISKLTVAAGNFIFRKGYGCGSCYEVKCTDNAACSGKSVTVVVSDECSSCSGYHFNLSGAAFASIANPGQQDTLRKLGQVNLQYRRVSCSFGNFVAVRIGENSRPPTYMEASIEYVNGDAEYIDLEVRDQSFLTVSRVGGATWSFFFAGYNLQPPMTLTLTQRYSNGTKGNTIQLPNIIPIDWKIGQVYQSKTNF* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2556 265 Pfam Lytic transglycolase 81 153 IPR009009 -
Amo12g2556 265 SMART dpbb_1 76 154 IPR007112 -
Amo12g2556 265 SUPERFAMILY PHL pollen allergen 165 261 IPR036749 -
Amo12g2556 265 Gene3D - 164 265 IPR036749 -
Amo12g2556 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 261 IPR007117 -
Amo12g2556 265 Pfam Expansin C-terminal domain 165 250 IPR007117 -
Amo12g2556 265 PRINTS Major pollen allergen Lol pI signature 237 254 IPR005795 GO:0005576|GO:0019953
Amo12g2556 265 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576|GO:0019953
Amo12g2556 265 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576|GO:0019953
Amo12g2556 265 PRINTS Major pollen allergen Lol pI signature 98 108 IPR005795 GO:0005576|GO:0019953
Amo12g2556 265 PANTHER EXPANSIN-LIKE PROTEIN B1 6 265 - -
Amo12g2556 265 SUPERFAMILY Barwin-like endoglucanases 38 161 IPR036908 -
Amo12g2556 265 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Amo12g2556 265 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Amo12g2556 265 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Amo12g2556 265 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Amo12g2556 265 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Amo12g2556 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 164 IPR007112 -
Amo12g2556 265 PANTHER EXPANSIN-B3 6 265 - -
Amo12g2556 265 Gene3D - 26 160 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2556 Amo-Chr12 109350680 109354031 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2556 21 265 Expansin Gene Family AT1G65680 37.698 2.78e-59 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2556 - - ahf:112728471 396.741