Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2555 ATGAAGGTTCACACATTTAATCTTGTAGTCCTTTGTTCTATGCTTTTAAGCACTACTTGCTATTGCATCAACCCCAAATTTTTCAATCCTTCAAAAGTTCCAAATGATGAAAAACCATGGGACCAAACACAAGCTACATGGTATGGAACGCCGGACGGAGCTGGATCAGAGAGTGGTGCATGTAAATATGGTAAAACTGTGGAGAATCCTCCAATCTCTAAATTGACGGCGGCTGCTGGCCATTATATTTTCCGCCAGGGCTATGGATGTGGTGCTTGTTATGAGGTGAAATGCACAGATAATCCAGCATGTTCAGGGAAGTCAGTGACAGTGGTGGTAAGTGATGAATGCCCATGGTGTTCGGGATACCATTTCAATCTCAGTGGCGCCGCTTTTGCTTCCCTCGCAAATCCAAGTCAACAAGATACTCTTCGCAAACTTGGACAAGTCAACCTTCAATACAGAAGATCAGAGTATTTGGAAGTATCAATGGAATACGTAAATGGAGATGCAGATGTTCATATAGAAAATACTATAAGTTTCGATAACATTTCTCATGTGTGGGGTCCAACTTGGAGTGTTTTTGCTGGTGGTTATGATCTACAACCTCCATTCAATTTTACACTCGCTCAACATTATCCCAATGGCATCAAAGGAAAGACCATTATAATTCGTGATATGATCCCAAAGGATTGGAAGATCGGTCAAGTTTATCGATCAAAGATAAATTTTTAG 735 0.4082 MKVHTFNLVVLCSMLLSTTCYCINPKFFNPSKVPNDEKPWDQTQATWYGTPDGAGSESGACKYGKTVENPPISKLTAAAGHYIFRQGYGCGACYEVKCTDNPACSGKSVTVVVSDECPWCSGYHFNLSGAAFASLANPSQQDTLRKLGQVNLQYRRSEYLEVSMEYVNGDADVHIENTISFDNISHVWGPTWSVFAGGYDLQPPFNFTLAQHYPNGIKGKTIIIRDMIPKDWKIGQVYRSKINF* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2555 244 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Amo12g2555 244 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Amo12g2555 244 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Amo12g2555 244 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Amo12g2555 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
Amo12g2555 244 SUPERFAMILY Barwin-like endoglucanases 39 156 IPR036908 -
Amo12g2555 244 Pfam Lytic transglycolase 78 153 IPR009009 -
Amo12g2555 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 156 IPR007112 -
Amo12g2555 244 Gene3D - 154 244 IPR036749 -
Amo12g2555 244 PANTHER EXPANSIN-LIKE PROTEIN B1 7 244 - -
Amo12g2555 244 PANTHER EXPANSIN-B3 7 244 - -
Amo12g2555 244 SUPERFAMILY PHL pollen allergen 158 240 IPR036749 -
Amo12g2555 244 Gene3D - 27 153 IPR036908 -
Amo12g2555 244 SMART dpbb_1 76 154 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2555 Amo-Chr12 109281029 109287823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2555 21 244 Expansin Gene Family AT1G65680 36.653 4.52e-55 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2555 - - ahf:112728471 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2555 12 109281029 109287823 Amo12g2555 12 109281029 109287823 ECH