Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2554 ATGAAGGTTCACACATTTAATCTTGTAGTCCTTTGTTCTATGCTTTTAAGCACTACTTGCTATTGCATCAACCCCAAATTTTTCAATCCTTCAAAAGTTCCAAATGATGAAAAACCATGGGACCAAACACAAGCTACATGGTATGGAACCCCCGATGGTGCTGGTTCAGATAGTGGTGCATGTAGTTATGGTAAAACTGTGGAGAGTCCTCCAATTTCTAAATTGACAGCGGCTGTAGGCCATTATATTTTTCGTCAAGGTTATGGATGTGGTGCTTGTTACGAGGTGAAATGCACAGATAATGCAGCATGTTCAGGGAAGCCAGTGACAGTGGTGGTAAGTGATGAATGCCCATCGTGTTCAGGATACCATTTCAATCTCAGTGGCGCCGCTTTTGCTTCCATTGCAAATCCAGGTCAACAAGATATTCTTCGTAAACTTGGACAAGTCAACCTTCAATACAGAAGGGTTTCATGCTCATTTGGACGTTCTATAGCATTTAGAATGGGTGAAAATTCTGAACCAAATAAATTAGAAGTATCAATGGAATACGTAAATGGAGATGCAGATATTCATATAGAAAATGGTCCTGAACAAGGTTTAGAGATTTCTCATGTGTGGGGTGCAACTTGGAGTGTTTTTGCTGGTGGTTATGCTATACAACCTCCATTCAATTTTACACTCGTTCAACGTTATCCCGATGGCACCAAAGGAAAGACCATTCTGGTTCCTAATATATTCACACAGGATTGGAAGATCGGTCAAGTTTATCAATCAACGATAAATTTCTAG 792 0.4003 MKVHTFNLVVLCSMLLSTTCYCINPKFFNPSKVPNDEKPWDQTQATWYGTPDGAGSDSGACSYGKTVESPPISKLTAAVGHYIFRQGYGCGACYEVKCTDNAACSGKPVTVVVSDECPSCSGYHFNLSGAAFASIANPGQQDILRKLGQVNLQYRRVSCSFGRSIAFRMGENSEPNKLEVSMEYVNGDADIHIENGPEQGLEISHVWGATWSVFAGGYAIQPPFNFTLVQRYPDGTKGKTILVPNIFTQDWKIGQVYQSTINF* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2554 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 259 IPR007117 -
Amo12g2554 263 Pfam Lytic transglycolase 77 153 IPR009009 -
Amo12g2554 263 SUPERFAMILY Barwin-like endoglucanases 39 161 IPR036908 -
Amo12g2554 263 PANTHER EXPANSIN-B3 7 263 - -
Amo12g2554 263 PANTHER EXPANSIN-LIKE PROTEIN B1 7 263 - -
Amo12g2554 263 Gene3D - 27 160 IPR036908 -
Amo12g2554 263 Gene3D - 161 263 IPR036749 -
Amo12g2554 263 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576|GO:0019953
Amo12g2554 263 PRINTS Major pollen allergen Lol pI signature 183 198 IPR005795 GO:0005576|GO:0019953
Amo12g2554 263 PRINTS Major pollen allergen Lol pI signature 167 182 IPR005795 GO:0005576|GO:0019953
Amo12g2554 263 PRINTS Major pollen allergen Lol pI signature 98 108 IPR005795 GO:0005576|GO:0019953
Amo12g2554 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 164 IPR007112 -
Amo12g2554 263 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Amo12g2554 263 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Amo12g2554 263 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Amo12g2554 263 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Amo12g2554 263 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Amo12g2554 263 SMART dpbb_1 76 154 IPR007112 -
Amo12g2554 263 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Amo12g2554 263 SUPERFAMILY PHL pollen allergen 163 259 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2554 Amo-Chr12 109267829 109271349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2554 21 263 Expansin Gene Family AT1G65680 40.239 3.07e-65 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2554 - - ahf:112728471 461.84