Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2540 ATGTTTGCTCTCTTGTCCTGTTTGAAGCGTCCCTGGCGTGTTCAATCTCGCTGCATCCCGCGAGTGCTGGAGGGCCGCCACGTGCTCGGCATCGATGAAACTGGAAGCGGCAAGACCGCCGCTCTCGCCCTCCCGATCCTCCACCGCCTGTCGGAGCACCTGTTCGGTGTGTTCGCGTTGGTGGTGACGCCCACTAGGGAACTGGCGTTCCAGCTACCAGAGCAGTTCCGCGCCCTCGGTTCCTGCCTCCACCTCCGCATTGCAGTGGTTGTCGGCGGCATGGACATGCTTCAGCAAACCAAGGAGCTTGCTGCCAGGCCCCACGTCGTTATTGCCACGCCGGGGAAGATCAAGGCCTTGCTCGAGAATCCTGATATTCCTCTAGTTTTTGCTAGAACTAAGGATAGACTGTATGTCTACGAGGCATATGAAGGCCTGAAAACTGTAGAAACACTTAAGCAACAGGCTATGTTCATCCCTAAAAAGGTCAAGGAGATGGAGAGGGAGGAGCTGAATTTGAACAAAGAGAGTAATAACAACGGTGTTGGAGGTAATAACAGTAAGAGTGGCGGTGATGGCTTCATTGACAGAAGCAARATCCTTACATGCTTACAAACTTGA 621 0.533 MFALLSCLKRPWRVQSRCIPRVLEGRHVLGIDETGSGKTAALALPILHRLSEHLFGVFALVVTPTRELAFQLPEQFRALGSCLHLRIAVVVGGMDMLQQTKELAARPHVVIATPGKIKALLENPDIPLVFARTKDRLYVYEAYEGLKTVETLKQQAMFIPKKVKEMEREELNLNKESNNNGVGGNNSKSGGDGFIDRSKILTCLQT* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2540 206 PANTHER RNA HELICASE 8 134 - -
Amo12g2540 206 Pfam DEAD/DEAH box helicase 13 124 IPR011545 GO:0003676|GO:0005524
Amo12g2540 206 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 8 134 - -
Amo12g2540 206 Gene3D - 3 135 IPR027417 -
Amo12g2540 206 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 19 176 IPR014001 -
Amo12g2540 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 126 IPR027417 -
Amo12g2540 206 SMART ultradead3 7 178 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2540 Amo-Chr12 109089435 109091166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2540 8 122 Eukaryotic Initiation Factors Gene Family AT3G13920 35.652 7.67e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2540 K14778 - gmx:100798597 241.121