Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2535 ATGGCAGCATCACTAGTAGGAGGAGCTGCAGTAGGTGCTGTGTTTGGAGAACTGCTAAAAGCGGTCCTGGCAATGAAAGACAAGGCCATGATGTTCAGACAAACCTTAGCGCACCTGAGAACAACGTTAACAGCAATCGCTCCTGTGGTCAAAGAGATAGAGAACCACAACAATGAATTGGGTCGTCCAAAGGAAGAGCTTGAATCCCTCATGAGAGAAATGGAACAAGGCACCAAGCTCGTCTAYAAGTGTTCCAAGATCCGCAAGTTGAATTTCATCGCCAGGATCCGGTACCAAGAACAGCTGGTGGCGTTGGTAGAATCTTTGGTCAAGTTCTTCATGATTGATTTGCAGGCTCAGACAGCCAGAGATTTGAAGGAGACTCTGCTTGAGGTCAGGAAAATAAGCAGTGAAGTGAGTAAATTATCCTCTGCATCACATTTACGGTGCTCTTCTTCTGGTCACGTCTCTTTATCCGCTGATTTGGGCCATTTAGAGATACACGAAACAAGTTCGCCGTCTTTGGGATCTAATGCTTTTGTGAATCGCCAGAGCCAATCCATTTTCAACACAAACATCAAAGCCGACGAGTCAAGTAGTCCAACTGACTCTGTTACAATAACGTTCCCCGATTTCCAAGGGTCTTCTAGTAATTTCCATATTGATGAGTTGTTAGGTGCTTCGGGAGAGGTTCTTGGGATGACGAGTTATGGAACGTTTGCTTACAAAGCGATGTTGGAGGATGGGACGACGCTGGTTGTGAAAAGGCTGAGAAATGTGGTGGTGGGGAAGAGTGAGTTTGATCGGCAGTTGCTGATTTTGCAAAGGCTTTCTAGGCACCCGAATATTATGCCCCTTCTTGCTGGCTATTATTCCAAGGATGAGAAGTTGCTCATTTACGACTACATAGCCAGCTGCAACCTTTCCGATCTGTTGCATGAGAAAAGGAAGAATGGAATGCCACTACTAGATTGGGATTTGAAACTGAAGATTTTACTTGGAGTTGCAAAGGGTGTTGCTCATATCCACTCATCAASTGAAGGAGAATTTGTTCATGGCAACATTAGCACATCCAATATACTTGTCACAGCAGATATTAAAGGTTGCATATCGTATTTTGGYTTGCATTCTATATTCAGTGGCAAATCAASCAAYCTTTTTACACGAAATAAAGGGTATTACGCGCCGGAGGTTATTCGAACTGGAATTCTGACTCAAAAATCTGATGTGTACGGATTTGGTGTTGTTCTTTTTGAGATAYTAACTGGAAAATTGTCATCTGAGTATAATAATAATGATCTTCAKAKCTCATTTAACAATTCGATTCGCGATGACATGCATGGTSGAATGCTAARGARGATGATGMTACTAKCAGAGGCATGCATGGCAATATCACCTGAATTGAGACCTTCCATGGATGAGGTTGTTAAGAAACTGGAAGTAGTCCAAGTTGTTGTGTCATGTATTGTGTATGGTTTGAAGCCTTTTCCATATTGA 1497 0.4235 MAASLVGGAAVGAVFGELLKAVLAMKDKAMMFRQTLAHLRTTLTAIAPVVKEIENHNNELGRPKEELESLMREMEQGTKLVYKCSKIRKLNFIARIRYQEQLVALVESLVKFFMIDLQAQTARDLKETLLEVRKISSEVSKLSSASHLRCSSSGHVSLSADLGHLEIHETSSPSLGSNAFVNRQSQSIFNTNIKADESSSPTDSVTITFPDFQGSSSNFHIDELLGASGEVLGMTSYGTFAYKAMLEDGTTLVVKRLRNVVVGKSEFDRQLLILQRLSRHPNIMPLLAGYYSKDEKLLIYDYIASCNLSDLLHEKRKNGMPLLDWDLKLKILLGVAKGVAHIHSSXEGEFVHGNISTSNILVTADIKGCISYFGLHSIFSGKSXNLFTRNKGYYAPEVIRTGILTQKSDVYGFGVVLFEILTGKLSSEYNNNDLXXSFNNSIRDDMHGXMLXXMMXLXEACMAISPELRPSMDEVVKKLEVVQVVVSCIVYGLKPFPY* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2535 498 Coils Coil 53 73 - -
Amo12g2535 498 SUPERFAMILY Protein kinase-like (PK-like) 230 488 IPR011009 -
Amo12g2535 498 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 3 138 IPR008808 -
Amo12g2535 498 Gene3D Transferase(Phosphotransferase) domain 1 304 488 - -
Amo12g2535 498 ProSiteProfiles Protein kinase domain profile. 226 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2535 498 Gene3D Phosphorylase Kinase; domain 1 179 302 - -
Amo12g2535 498 PANTHER OS05G0480400 PROTEIN 190 483 - -
Amo12g2535 498 PANTHER OS05G0588300 PROTEIN 190 483 - -
Amo12g2535 498 ProSiteProfiles RPW8 domain profile. 1 151 IPR008808 -
Amo12g2535 498 Pfam Protein tyrosine and serine/threonine kinase 231 479 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2535 Amo-Chr12 108892873 108895294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2535 212 483 Receptor kinase-like Gene Family AT3G08680 42.955 3.45e-71 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo12g2535 PK_Tyr_Ser-Thr 1.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2535 - - aip:107625872 915.605