Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2528 ATGATGCAAGTGCTGTTATTCTTCCTGTCCCATTTTCTAGTTCTATTTGGTCAAGTGATCTCAACAGACACAGTTTTCAATGATGATGTTCTGGGGTTGATTGTGTTCAAAGCTGCTCTACAAGACCCAAATGGGAAACTCACTTCTTGGAATGAAGATGATAACAACCCTTGCAACTGGGTTGGTGTGAAATGTGACCCTTCAACTAATAGGGTAAATGCCCTTGTTCTTGATGGATTCTCTCTTTCTGGCCACATTGATAGAGGCCTATTGAGATTGCAGAACCTTCAGATTTTGTCACTTGCTAGGAACAACTTCACAGGGAGCATAAACCCTGATCTTACCAGCCTTGGGAATTTGCAAGTTCTTGATTTCAGTGAGAACAATCTATATGGACCAATCCCAAATGGTTTTTTCCAACAATGCTGGTCTCTGAGATCAGTTTCATTTGCAAATAACAACCTTTCAGGTAAAGTTCCCGAGTCTTTGAGTTCATGCACTTCATTGGAAACTCTAAACTTTTCCTCTAATCAGCTACATGGTGAATTGCCATCCGGGATATGGTATCTGAAGGGTCTGCAATCATTTGATTTTTCAAGTAACCTGCTAGAAGGAGAGATTCCTGAAGGAATTCAGAATCTGTATGATTTGAAGGAGTTAAGGCTTGGCAAGAACCGACTCTCCGGCCGGCTTCCGGAGGACATTGGAGGCTGCTTGCTGTTAAAGTTTATTGATTTCAGTGATAATTTTCTCTCTGGGAAAATTCCTGAGTCAATGCAAAGGCTCACCTCATGCACATCACTCAGTTTGCAGGGGAATTCGTTCACCGATCACATTCCGGATTGGATTGGAGAATTGAAGAGTTTGGAGATATTGGACCTTTCTAACAACAGATTTTCTGGTTGGATTCCAAAATCAATTGGAAATGTTGATTCACTGAGTGTGTTGAATTTATCCAGGAATGAGATCACTGGGAACATACCAGATTCAATGATAAACTGCAACAAGCTTTTGGTTCTTGACATTAGTCACAATCACATGGCAGGGATCCTTCCTTCATGGATATTCAAGATGGGGTTGCAAAGTATCTCACTTTCTGAAAACAACTTGAGAAAATCCATACCTGTTTCTTATCATGGTCTTCAGATTTTGGATTTGTCATCAAATGCATTTTCTGGCAAAATTCCATTCAGCATTGGAGGACTCAGTAGCTTGCAAGTGTTGAATTTGTCAACCAATAACATCTCTGGCACTATTCCAGTAAGCATAGGAGAACTCAAATCTTTGTACATTCTTGACTTGAGTGGGAACAAGCTCAATGGAAGCATTCCTAATGAAATAGAAGGTGCAGTTTCTCTCAGTGAACTGAGGCTACAAAAGAACTTGTTGAGTGGAAGAATTCCAAGACAAATTGAGAAGAATCTTTCACACAACAAGCTTATTGGTTCAATCCCTGCACCAATTGCAAATCTAACCAATCTTCAGTATTTAGATTTGTCATGGAATGAACTCTCTGGAAGCTTACCAAAGGAGCTAACAAATCTTTCCCAAATTTCATCATTCAATGTTTCTCACAATCATCTTCAAGGAGAGTTACCAGTTGGTGGTTTCTTTGATACCATATCTCCCTCTTCTATCTCTGGTAATCCATTGTTATGTGGTTCTGTCTTCAATCACTCCTGCACCATTGACCATCAAAAACCAATTGTCCTGAATCCGAATTCTTCTTACTCCAACTCAGGAGCATCCTCACAAAACCGCCATCATAAAATCATCCTCAGTATATCTGCACTTATAGCTATTGGTGCAGCTGTTTTCATTGCCATTGGTGTGGTGGTAGTTACTGTTCTAAACATCCATGTGAGGTCCTCAACTTCGCATTCACCGGCTCAATTTGCATTATCCGGTGGTGGCGACGAAGACTATAGTGGTTCGCCCGTGAAGGATCCAAACTATGGCAAGCTAGTTATGTTTTCCGGCCATGCAGAGTTTGCTGATGGGGCTAATAATCTTCTAAACAAAGACAGCGAAATCGGCCGTGGTGGATTCGGAGTTGTTTATTGCACTGTCCTTCGCGACGGCCGTTCTGTTGCAATCAAGAAGCTTACAATCTCTGGTTTGATAAAGTCACAAGAAGATTTTGAGAAGGAAGTTAAGATTCTAGGGGAGATCAAGCACCAGAATCTTGTAGCACTTGAAGGTTATTATTGGACTTCATCATTGCAGCTTCTTATTTATGAGTATTTATCCAGAGGGAGTTTGCATAAGCTTCTACATGATGAAAATAGCAAGAAAGTTGTGCTTTCTTGGCAACAAAGATTCAAGATTATTCTTGGCATGGCAAGAGGTTTGGCCTATTTGCACAAACTCAACATGATCCACTACAATCTAAAATCAAACAATGTTCTAATAGATTGTTCTTATGAGCCTAGAATTGGAGACTTTGGCCTTGTGAGGCTATTGCCAATGCTGGATCATTATGTCTTGAGCAGCAAGATACAGAGTGCACTTGGATACATGGCTCCGGAATTCGCCTGCCGGACGGTTAGGATCACGGAGAAGTGCGACGTGTACGGCTTCGGAGTCCTTGTTCTTGAGGTGGTGACAGGGAGAAAGCCTGTGGAGTACATGGAGGATGATGTGGTTGTGCTTTGTGACATGGTGAGAGGTGCATTGGAAGGAGACAAGTTAGAGCAGTGTGTTGATGAGAGGCTTTTTGGTAATTTTGCAGCAGAGGAAGCAGTTCCTCTGTTGAAATTAGGGTTGGTTTGTGCTTCACAAGTTCCATCAAACCGTCCAGATATGGCTGAGGTTGTCAACATTCTTGAAATGATCCAATGCCCTTCAGAAGGACAAGAAGAAATACAAATAAGTTCTTGA 2880 0.4139 MMQVLLFFLSHFLVLFGQVISTDTVFNDDVLGLIVFKAALQDPNGKLTSWNEDDNNPCNWVGVKCDPSTNRVNALVLDGFSLSGHIDRGLLRLQNLQILSLARNNFTGSINPDLTSLGNLQVLDFSENNLYGPIPNGFFQQCWSLRSVSFANNNLSGKVPESLSSCTSLETLNFSSNQLHGELPSGIWYLKGLQSFDFSSNLLEGEIPEGIQNLYDLKELRLGKNRLSGRLPEDIGGCLLLKFIDFSDNFLSGKIPESMQRLTSCTSLSLQGNSFTDHIPDWIGELKSLEILDLSNNRFSGWIPKSIGNVDSLSVLNLSRNEITGNIPDSMINCNKLLVLDISHNHMAGILPSWIFKMGLQSISLSENNLRKSIPVSYHGLQILDLSSNAFSGKIPFSIGGLSSLQVLNLSTNNISGTIPVSIGELKSLYILDLSGNKLNGSIPNEIEGAVSLSELRLQKNLLSGRIPRQIEKNLSHNKLIGSIPAPIANLTNLQYLDLSWNELSGSLPKELTNLSQISSFNVSHNHLQGELPVGGFFDTISPSSISGNPLLCGSVFNHSCTIDHQKPIVLNPNSSYSNSGASSQNRHHKIILSISALIAIGAAVFIAIGVVVVTVLNIHVRSSTSHSPAQFALSGGGDEDYSGSPVKDPNYGKLVMFSGHAEFADGANNLLNKDSEIGRGGFGVVYCTVLRDGRSVAIKKLTISGLIKSQEDFEKEVKILGEIKHQNLVALEGYYWTSSLQLLIYEYLSRGSLHKLLHDENSKKVVLSWQQRFKIILGMARGLAYLHKLNMIHYNLKSNNVLIDCSYEPRIGDFGLVRLLPMLDHYVLSSKIQSALGYMAPEFACRTVRITEKCDVYGFGVLVLEVVTGRKPVEYMEDDVVVLCDMVRGALEGDKLEQCVDERLFGNFAAEEAVPLLKLGLVCASQVPSNRPDMAEVVNILEMIQCPSEGQEEIQISS* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2528 959 ProSitePatterns Protein kinases ATP-binding region signature. 678 701 IPR017441 GO:0005524
Amo12g2528 959 Gene3D Phosphorylase Kinase; domain 1 652 748 - -
Amo12g2528 959 Gene3D Ribonuclease Inhibitor 27 183 IPR032675 -
Amo12g2528 959 Pfam Leucine rich repeat 288 346 IPR001611 GO:0005515
Amo12g2528 959 Pfam Leucine rich repeat 380 439 IPR001611 GO:0005515
Amo12g2528 959 ProSiteProfiles Protein kinase domain profile. 672 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2528 959 PRINTS Leucine-rich repeat signature 491 504 - -
Amo12g2528 959 PRINTS Leucine-rich repeat signature 429 442 - -
Amo12g2528 959 SUPERFAMILY Protein kinase-like (PK-like) 674 946 IPR011009 -
Amo12g2528 959 ProSiteProfiles Leucine-rich repeat profile. 493 516 IPR001611 GO:0005515
Amo12g2528 959 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 947 - -
Amo12g2528 959 Pfam Protein tyrosine and serine/threonine kinase 673 882 IPR001245 GO:0004672|GO:0006468
Amo12g2528 959 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Amo12g2528 959 SUPERFAMILY L domain-like 292 546 - -
Amo12g2528 959 SUPERFAMILY L domain-like 42 375 - -
Amo12g2528 959 Pfam Leucine Rich Repeat 493 515 IPR001611 GO:0005515
Amo12g2528 959 Gene3D Ribonuclease Inhibitor 288 564 IPR032675 -
Amo12g2528 959 CDD STKc_IRAK 678 943 - -
Amo12g2528 959 Gene3D Transferase(Phosphotransferase) domain 1 749 954 - -
Amo12g2528 959 SMART LRR_typ_2 214 238 IPR003591 -
Amo12g2528 959 SMART LRR_typ_2 491 515 IPR003591 -
Amo12g2528 959 SMART LRR_typ_2 426 450 IPR003591 -
Amo12g2528 959 SMART LRR_typ_2 286 309 IPR003591 -
Amo12g2528 959 SMART LRR_typ_2 402 424 IPR003591 -
Amo12g2528 959 SMART LRR_typ_2 166 190 IPR003591 -
Amo12g2528 959 SMART LRR_typ_2 117 141 IPR003591 -
Amo12g2528 959 SMART LRR_typ_2 310 334 IPR003591 -
Amo12g2528 959 Gene3D Ribonuclease Inhibitor 184 281 IPR032675 -
Amo12g2528 959 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 947 - -
Amo12g2528 959 SMART LRR_sd22_2 491 517 - -
Amo12g2528 959 SMART LRR_sd22_2 426 449 - -
Amo12g2528 959 SMART LRR_sd22_2 286 312 - -
Amo12g2528 959 SMART LRR_sd22_2 190 213 - -
Amo12g2528 959 SMART LRR_sd22_2 93 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2528 Amo-Chr12 108802238 108805669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2528 12 953 Receptor kinase-like Gene Family AT5G01890 58.420 0.0 1066
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Amo12g2528 PK_Tyr_Ser-Thr 3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2528 - - gmx:100791204 1437.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2528 12 108802238 108805669 Amo02g2719 02 84215997 84219923 hybridization
Amo14g3049 14 128957529 128961702 Amo12g2528 12 108802238 108805669 PCT
Amo04g2058 04 90358818 90362141 Amo12g2528 12 108802238 108805669 PCT
Amo12g2528 12 108802238 108805669 Amo14g3049 14 128957529 128961702 PCT
Amo12g2528 12 108802238 108805669 Amo04g2058 04 90358818 90362141 PCT