Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2524 ATGAAGGTTCACACATTTACTCTTGCAGTCCTTTGTTCTATGCTTTTAAGCACTACTTGCTATTGCATCAACCCCAAATTTTTCAATCCTTCAAAAGTTCCAAATGATGAAAAACCATGGGACCAAACACAAGCTACATGGTATGGAACCCCCGACGGAGCTGGATCAGAGAGTGGTGCATGTAAATATGGTAAAACTGTGGAGAATCCTCCCATCTCTAAATTGACGGCGGCTGCTGGCCATTATATTTTCCGCCAGGGCTACGGATGTGGTGCTTGTTATGAGGTGAAATGCACAGATAATGCAGCATGTTCAGGGAAGCCAGTGAGAGTGGTGGTAAGTGATGAATGCCCATCGTGTTCAGGATACCATTTCAATCTCAGTGGCGCCGCTTTTGCTTCCATCGCAAATCCAGGTCAACAAGATGCTCTTCGCAAACTTGGACAAGTCAACCTTCAATACAGAAGGGTTTCATGCTCATTTGGAGATTCTATAGCATTTATCATCGGTGAAAAATCTAGATCAGATTATTTGGAAGTATCAATGGAATACGTAAATGGAGATGCAGATGTTTATATAGAAAATACTATAAATTTCAATAACATTTCTCATGTGTGGGGTCCAACTTGGAGTGTTTTTGCTGGTGGTTATGCTCTACAACCTCCATTCAATTTTACACTCGTTCAACATTATCCCAATGGCATCAAAGGAAAGACCATTATGATTCGTGATATGATCCCAAAGGATTGGAAGATTGGTCAAGTTTATCGATCAAAGATAAATTTCTAG 789 0.4068 MKVHTFTLAVLCSMLLSTTCYCINPKFFNPSKVPNDEKPWDQTQATWYGTPDGAGSESGACKYGKTVENPPISKLTAAAGHYIFRQGYGCGACYEVKCTDNAACSGKPVRVVVSDECPSCSGYHFNLSGAAFASIANPGQQDALRKLGQVNLQYRRVSCSFGDSIAFIIGEKSRSDYLEVSMEYVNGDADVYIENTINFNNISHVWGPTWSVFAGGYALQPPFNFTLVQHYPNGIKGKTIMIRDMIPKDWKIGQVYRSKINF* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2524 262 SUPERFAMILY Barwin-like endoglucanases 39 161 IPR036908 -
Amo12g2524 262 SUPERFAMILY PHL pollen allergen 164 258 IPR036749 -
Amo12g2524 262 Pfam Expansin C-terminal domain 165 247 IPR007117 -
Amo12g2524 262 Gene3D - 161 262 IPR036749 -
Amo12g2524 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 164 IPR007112 -
Amo12g2524 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 258 IPR007117 -
Amo12g2524 262 PANTHER EXPANSIN-LIKE PROTEIN B1 7 262 - -
Amo12g2524 262 Gene3D - 27 160 IPR036908 -
Amo12g2524 262 PANTHER EXPANSIN-B3 7 262 - -
Amo12g2524 262 SMART dpbb_1 76 154 IPR007112 -
Amo12g2524 262 Pfam Lytic transglycolase 78 153 IPR009009 -
Amo12g2524 262 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Amo12g2524 262 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Amo12g2524 262 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Amo12g2524 262 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Amo12g2524 262 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Amo12g2524 262 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
Amo12g2524 262 PRINTS Major pollen allergen Lol pI signature 98 108 IPR005795 GO:0005576|GO:0019953
Amo12g2524 262 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576|GO:0019953
Amo12g2524 262 PRINTS Major pollen allergen Lol pI signature 167 182 IPR005795 GO:0005576|GO:0019953
Amo12g2524 262 PRINTS Major pollen allergen Lol pI signature 183 198 IPR005795 GO:0005576|GO:0019953
Amo12g2524 262 PRINTS Major pollen allergen Lol pI signature 234 251 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2524 Amo-Chr12 108716729 108722095 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2524 21 262 Expansin Gene Family AT1G65680 37.849 4.86e-61 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2524 - - ahf:112728471 541.576