Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2520 ATGGCTTTGATTGTGGATCAACAATCAAACTTTAAACACTTCTGTAAAATTTGCAAAAAAGGATTTGGTTGTGGAAGAGCTCTAGGAGGACACATGAGGGCTCATGGAATAGGAGATGAATCAGGTCACATGGATGATGATGACCCAGCAAGTGATTGGGAAGATAGGCTTGGTGGAAATGTTCCACCAAGCAACAAGCGCATGTATGCTCTTAGAACAAACCCTAATAGGTTAAAGAGTTGTAGGGTGTGTGAAAATTGTGGCAAGGAGTTTTTGTCTTGGAAATCCTTTCTTGAGCACGGTAAATGCACCTCCGAGGACGCAGAGTCCCTCGTATCCTCTCCAGGGTCCGATGCTGCTGCTGATGGCATCGGACCTACCAGGAGAGGATGCGGGTGGTCCAAAAGAAAGAGGTCGTTAAGAGCAAAAGTGGGTAGCTTCAATTACAATTGCCCCTCAAGCGAAGAGGAAGACCTAGCGAATTGCTTAATGATGTTGTCCAATGCGATTGTGGACCCTCTGACGTCGGCCGTGGCCGAGCCGGAGGAGTCTTGCGCCTCGGCCAGCAGAGACGAGGAGCAAAGAAGAAACCCTATGAACTTTGTTGCACCATTCTCTTCTTATAAAGTTCCAAACAACGATAACAACAATAACAATAACAACAAGGCGAAAGGTGTTGCTAAGGGCTTGTTTGAATGCAAAGCGTGCAAGAAGGTTTTCAACTCGCACCAAGCGTTGGGTGGCCACAGAGCTAGCCACAAGAAGGTTAAGGGCTGCTTTGCGGCGAGGCTGGACAATCTCGACGACAGCCTCGCCGACGATGACGTCATGACACACGAAGAATTCTTCCCTACAAAATCAAACTCAACATTCCAATTTGATCAAAACCCTCACCATAACTCAGCCACATTGGCCTCATCATCAAAGAGGAAATCAAAGGTTCATGAATGCTCCATTTGCCATAGAAGCTTCTCCTCAGGACAAGCATTGGGAGGCCACAAAAGGTGCCATTGGATCACATCAAATGCACCGGACACTTCCACATTGGCTAGGTTTCAACAATTTCAGGAACATTTGGATCAAATACCAAAGTTTGATGGATCTTCTGAGCCTCTTGATCTCAAACTTGACCTCAACCTTCCTGCACCAACCAATGATCTTTCTAGAAGGAATAACAATGTTAATGTTTCCACAGAAATCTTCTTGCAGCCATGGGTAGGAAGAGCAGGAGGAGGAACCGCCACAAAGGAAAACAATACAAACATGAAAGATGATAGCAACAATAATAACAACAATAGCCAGAGTCAAATTAGTCACCAGCACCCCACCAACCATAACCAAATTGATCATAATGAAAATGTTGGTGTTGACGGGGACAAGAATAATAGTAACCCCAACAACAACAACAACAACAACAACAATAACAATGATTTGATGCAAAGTGTGGATAATGAAGCTGATAGTAAGATCAAGCTAGCAAAACTTAGTGAGCTAACATGA 1500 0.4453 MALIVDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGHMDDDDPASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLVSSPGSDAAADGIGPTRRGCGWSKRKRSLRAKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLTSAVAEPEESCASASRDEEQRRNPMNFVAPFSSYKVPNNDNNNNNNNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDSLADDDVMTHEEFFPTKSNSTFQFDQNPHHNSATLASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQEHLDQIPKFDGSSEPLDLKLDLNLPAPTNDLSRRNNNVNVSTEIFLQPWVGRAGGGTATKENNTNMKDDSNNNNNNSQSQISHQHPTNHNQIDHNENVGVDGDKNNSNPNNNNNNNNNNNDLMQSVDNEADSKIKLAKLSELT* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2520 499 PANTHER OS02G0659100 PROTEIN 1 498 - -
Amo12g2520 499 PANTHER OS02G0659100 PROTEIN 1 498 - -
Amo12g2520 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 258 IPR013087 -
Amo12g2520 499 MobiDBLite consensus disorder prediction 413 480 - -
Amo12g2520 499 Pfam C2H2-type zinc finger 314 339 - -
Amo12g2520 499 Pfam C2H2-type zinc finger 13 35 - -
Amo12g2520 499 Pfam C2H2-type zinc finger 231 255 - -
Amo12g2520 499 ProSitePatterns Zinc finger C2H2 type domain signature. 233 253 IPR013087 -
Amo12g2520 499 MobiDBLite consensus disorder prediction 408 480 - -
Amo12g2520 499 MobiDBLite consensus disorder prediction 288 307 - -
Amo12g2520 499 MobiDBLite consensus disorder prediction 38 54 - -
Amo12g2520 499 MobiDBLite consensus disorder prediction 38 59 - -
Amo12g2520 499 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Amo12g2520 499 ProSitePatterns Zinc finger C2H2 type domain signature. 317 337 IPR013087 -
Amo12g2520 499 SUPERFAMILY beta-beta-alpha zinc fingers 230 337 IPR036236 -
Amo12g2520 499 SMART c2h2final6 231 253 IPR013087 -
Amo12g2520 499 SMART c2h2final6 13 35 IPR013087 -
Amo12g2520 499 SMART c2h2final6 315 337 IPR013087 -
Amo12g2520 499 Gene3D Classic Zinc Finger 11 104 - -
Amo12g2520 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 315 337 IPR013087 -
Amo12g2520 499 SUPERFAMILY beta-beta-alpha zinc fingers 13 101 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2520 Amo-Chr12 108621970 108623469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2520 135 380 C2H2 Transcription Factor Family AT1G02040 33.463 2.33e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo12g2520 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2520 - - ahf:112720137 939.488