Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2511 GGGAGAGGGAAAAAAAAGAAAGAAAAAAAGACAAGAAAAATAGTAATCAAGAAACATTGGTGGGTGACTTATAATAGTTTCGTTTATACTGTCCTAAGATCATCCTCTTCATTGCCTGAGCTTCAAACTGCTGCTGCTGATTCCTTCTCAGATCATCCTCTTCATCACCTCCAGCTCCAGACATGTGTTGCAAATGCAAATGAAAAAGGTGACAAGGCTTCCTTGATTCCTCACTCCAGACGGCCTGCACTCCCCTCTCTGCAAATACCCCCATGGTCATTAGATGCCGCATTATCTTCTTTCGCAAAGACGGATGGTTCATTCTCTCCATTGTCAAAGGTTGCCCACTCATTACCGGTTACTCCAATCGTATCTTTGGGTCAAGAAAGTGTACATGGCAGACATCTGGGATGTGCTTCTGATTTAAATACAATGGTTGTCAAGCAGCATATAACTCGATCACTTTCGGTTCCAGTTGATGCCAAAGCCAGCAAATTGAGGTGCACTCAGTCTAGGGTCTTGATTCGTATCATTTCAGCCAGGCGGCATCTTGCAACTGTTGATGGAACTTCAACTGGTGATTCTTCAGTCATGGAGATTGTTATTGAGGATGCTACAGTAGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGCAGAGCTCGGGGAAGGAGAGAATACTCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCATCAAGACTGTGCAGTAAAGTGGTTTAGTATTAAGGGCAACAGGACCTGCGATGTCTGCAAGCAGGATGTTCAAAACCTCCCGGTAACACTATTGAAAATTTATGATCGTCAACCCCCTGCCAGACAGCCACCAAATGTGCCACAACCAAGGGAAATAGCTTATTACCAAATGTCCCAAAATGCTCTAAAGTTGACTAGTTTTTCACTTTTTTACTGTCTCTTTGAACGCAATTTGGACTTATTTTCTTGTTTTTTGGGTCAGGCGTGGGTGGACGCAGTCTTCATCAGCTCCTCCGTGCTTCTTTTCTCT 1041 0.4332 GRGKKKKEKKTRKIVIKKHWWVTYNSFVYTVLRSSSSLPELQTAAADSFSDHPLHHLQLQTCVANANEKGDKASLIPHSRRPALPSLQIPPWSLDAALSSFAKTDGSFSPLSKVAHSLPVTPIVSLGQESVHGRHLGCASDLNTMVVKQHITRSLSVPVDAKASKLRCTQSRVLIRIISARRHLATVDGTSTGDSSVMEIVIEDATVDIPEEEAVCRICLAELGEGENTLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYDRQPPARQPPNVPQPREIAYYQMSQNALKLTSFSLFYCLFERNLDLFSCFLGQAWVDAVFISSSVLLFS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2511 347 CDD RING_CH-C4HC3_MARCH 216 264 - -
Amo12g2511 347 PANTHER OS02G0165000 PROTEIN 108 322 - -
Amo12g2511 347 SMART ringv_2 215 264 IPR011016 GO:0008270
Amo12g2511 347 ProSiteProfiles Zinc finger RING-CH-type profile. 208 270 IPR011016 GO:0008270
Amo12g2511 347 Pfam RING-variant domain 216 263 IPR011016 GO:0008270
Amo12g2511 347 PANTHER OS02G0165000 PROTEIN 108 322 - -
Amo12g2511 347 SUPERFAMILY RING/U-box 212 267 - -
Amo12g2511 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 271 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2511 Amo-Chr12 108447623 108453176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2511 199 270 C3H Transcription Factor Family AT2G37950 45.205 2.76e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2511 - - ahf:112765571 386.726