Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2507 ATGTCTTCAAGGGGGAGAAAAAAAGCAGCTATGCAACGCATGTTGCAACAGCTTCGAACCGCCACAAATTCCAGTGCTATGAACAAAGCCTCTATTATTGTTGATGCCACCAAATACATAGAAGAGTTGAAGCAAAAAGTGGAGGGAATTAACTCAGAGCTAGGAACCGTTGGATCTTCATCATCAACCTCCCAAGATGAATTACCAATGGTGACGGTAGAAACCCTAGAAAGGGGTTTTCTTATTAATGTGTTTTCAGAAAGGAATTGCCCCGGTATGCTTGTGGCAATACTTGAGGCCTTTGAAGAACTGGGTCTTGATGTTCTTGACGCTAGGGTTTCTTGTGAAGACAATTTCCAGCTTGAAGCTGTGGGAGGAGAAGGTCAAGATCAGGAGAGCATCGATGCGCAAGTGGTAAAACAAGCAGTGTTGCAAGCAATCAATAACATGAATTAA 456 0.4298 MSSRGRKKAAMQRMLQQLRTATNSSAMNKASIIVDATKYIEELKQKVEGINSELGTVGSSSSTSQDELPMVTVETLERGFLINVFSERNCPGMLVAILEAFEELGLDVLDARVSCEDNFQLEAVGGEGQDQESIDAQVVKQAVLQAINNMN* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2507 151 CDD ACT_UUR-ACR-like 91 147 - -
Amo12g2507 151 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 151 - -
Amo12g2507 151 Coils Coil 33 53 - -
Amo12g2507 151 Gene3D - 4 57 IPR036638 GO:0046983
Amo12g2507 151 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2507 Amo-Chr12 108374053 108376761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2507 25 145 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 27.068 1.35e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2507 - - aip:107628501 288.5