Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2493 ATGGAAGAGAAAGGAGGCGTGCTTATGCAACGATACGAGTTAGGGAGATTGTTAGGCCAAGGAAATTTCGCCAAAGTTTACCATGGAAGGAGCCTTATAACCGGAATAAGCGTGGCGATCAAAATAGTCGATAAAGAGAAGGTTCTGAAAGTGGGGATGATTGATCAGATTAAGCGCGAAATTTCAGTGATGAGACTAATCAGGCATCCACATGTGGTTGAGCTTTATGAGGTAATGGCCACCAAAACCAAGATCTACTTTATCATGGAATATGTTAAAGGTGGCGAGCTCTTCAACAAGGTACTAAAAGGAAAGATCAAGCAGGATGATGCTAGAAGATATTTTCAACAATTGATCAGTGCTGTGGACTATTGCCACAGCCGAGGTGTTTGCCACCGGGATCTCAAGCCGGAGAATCTTCTATTGGATGAAAATGGGAATTTGAAGGTCTCAGATTTCGGGCTAAGTGCGATTGCTGAATCTAGACACCAAGATGGACTACTCCATACTACTTGTGGCACCCCTGCCTATGTTGCTCCAGAAGTGATACTTAGAAAGGGCTATGATGGCTTCAAAGCTGATATATGGTCTTGTGGAGTCATACTTTATGTTCTTTTGGCAGGTTATCTTCCTTTCCGAGATTCGAATCTGATGGAAATGTATAAGAAGATTGGAAAGGGACAATTCAAGTTTCCGAGTTGGTTTCCTCCGGATGTGAAGAGATTACTGTCTAGAATCTTGGATCCTAATCCAAGGACAAGGATATCAATGGCTAAAATCATGGAAAGTTCATGGTTCAAGAAAGGGTTAGAGAAGCCAATTGTTACTAATGACAATGAAGAGAAAGAGTTAGCTCCCTTGGATGCTGATGGAGTGTTTGGATCATGCGAAAATGGCGGCCCTGCTGCTGAATCAACACCTGAATTTTCAAAGCCAAGCAACTTAAATGCGTTTGATATTATCTCCTATTCGTCTGGATTCGACTTGTCCGGCTTATTCGAGGAAACTGATCAAAAGAAACAAGTCAGGTTCACATCTAACAAGCCTGCATCCATCATAATCTCTAAACTAGACGAAATTTGCAAGCGCCTTCGGCTGAAAGTTAAGAAGAAAGATAGAGGTTTGATCAAGCTAGAAGGTACTAATGCTGGCAGAAAAGGGCCATTGGGAATTGATGCCGAGATTTTCGAGATCACGCCGGTGTTCCACCTTGTTGAACTCAAGAAATCAAGTGGAGACACATTGGAATACAAAAAGCTGCTAAATCAAGAAGTTAGGCCTGCACTTAAGGACATTGTTTGGAACTGGCAAGGAGAAGAACCACAAGGAATGTTGCAGATACAGCAACAAAATCATTCACAATCTGCCCAATCAGATGTGATAACACAATCAAATTAG 1398 0.4199 MEEKGGVLMQRYELGRLLGQGNFAKVYHGRSLITGISVAIKIVDKEKVLKVGMIDQIKREISVMRLIRHPHVVELYEVMATKTKIYFIMEYVKGGELFNKVLKGKIKQDDARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDENGNLKVSDFGLSAIAESRHQDGLLHTTCGTPAYVAPEVILRKGYDGFKADIWSCGVILYVLLAGYLPFRDSNLMEMYKKIGKGQFKFPSWFPPDVKRLLSRILDPNPRTRISMAKIMESSWFKKGLEKPIVTNDNEEKELAPLDADGVFGSCENGGPAAESTPEFSKPSNLNAFDIISYSSGFDLSGLFEETDQKKQVRFTSNKPASIIISKLDEICKRLRLKVKKKDRGLIKLEGTNAGRKGPLGIDAEIFEITPVFHLVELKKSSGDTLEYKKLLNQEVRPALKDIVWNWQGEEPQGMLQIQQQNHSQSAQSDVITQSN* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2493 465 CDD CIPK_C 316 430 - -
Amo12g2493 465 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2493 465 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 447 - -
Amo12g2493 465 Gene3D Kinase associated domain 1, KA1 311 435 - -
Amo12g2493 465 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Amo12g2493 465 Gene3D Transferase(Phosphotransferase) domain 1 4 310 - -
Amo12g2493 465 Pfam NAF domain 312 370 IPR004041 GO:0007165
Amo12g2493 465 PANTHER - 2 447 - -
Amo12g2493 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Amo12g2493 465 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2493 465 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Amo12g2493 465 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Amo12g2493 465 CDD STKc_SnRK3 11 265 - -
Amo12g2493 465 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2493 Amo-Chr12 108161378 108164799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2493 1 442 CBL-interacting serine-threonine protein kinases AT5G58380 65.055 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Amo12g2493 Pkinase 5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2493 K07198 - gmx:100815651 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3009 14 127545856 127547578 Amo12g2493 12 108161378 108164799 PCT