Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2492 ATGCCGGGGACACAAAATAACACGTTCATGGAGGCATCTGCGTCAAACGGCGTCGTTTTGTTCGGCAAATATGAGATTCTGGAATTGGCTGGAGTAGGCGCGTCAGCAAAGGTGTACCACGCTCGGCGCGTCGATACTGGCGAGAGCGTGGCGGTTAAGGCCGTTAGCAAGCGCCAGCTCAGCACTAGAGACGGTTACGCGGAGCAAATCGAGCGCGAAATTTCTATCATGCGCCGGATGCACCACCCGCACACCGTGAGGCTCTTTGAGGTACTTGCCACGAAGGCGAAGATTTACTACGTCATGGAGTACGCCGCCGGTGGCGAGCTTCTGCGCCGTGTCTCCTCCGCCGGAAGGATGACGGAGAATCTCGCCAGAAGATACTTCCAGCAGCTGATCTCCGCCGTCGCGTACTGCCACTCTCACGGCGTCTTCCACCGCGACCTCAAGCTTGAGAACCTCCTCGTCGACGAGAATATGGACCTGAAGGTGACGGATTTCGGGCTGAGTGCGGGTCGGAGTCAGTTCGGGCCAGACGGTTTGTTACACACAATTTGCGGTACTCCTGCTTACGTGGCACCTGAGATTCTCGCGAAAAAAGGCTACCGCGGAGGAAGTGTTGATATTTGGTCATGTGGTGTTATTTTATTCACTATTGTTGCGGGGTATTTACCCTTCAATGATTACAATATTACCCTTTTGTACCGAAAGATTTATCGAGGGCAGTTTCGGTATCCTAAGTGGGTCTCTTGTGATTTTAAACGCTTTGTCTCCAGGTTGTTAGATAGGGATCCAGAGACGAGAATTACTATCGACGAGATTTTGAAGGATCCGTGGTTTTGTCGGGGCGGATACAAGTATCCGACCCGAGTGGTGCCCGAGTTGGATGAAGATCATGTGATGCTGAAGGATTTGAACGCATTTGATTTGATTTCTTTCTCATCCGGATTTGACATTTCGGGTTTGCTGACCCACTCGGAGTATTTGAATTGCGTGGAGCGGTTTGTTTCTAAAGAGGAACCCGAAAGTATATTGGAGAGGGTGAAAATAATGGGGGCTAAGATGGAAAGGGTGAGAGTGGAAAAAGACGAAAATGCTTGTGCAGGTGTGAGGTTAGAGGGGTTAGATGGTAATTATGTTATTGCTGTTAGGATTTATAGATTAATGAATGAATTGGTGGTTATTGAGGTCAAAAGAAAAGAGAAAAAAGTGGGAGGTGGAAATTTTTGGAGGACTAGGTTGAAACCTTTACTTCTTGAATTGGCTCTCCGTTGA 1275 0.4894 MPGTQNNTFMEASASNGVVLFGKYEILELAGVGASAKVYHARRVDTGESVAVKAVSKRQLSTRDGYAEQIEREISIMRRMHHPHTVRLFEVLATKAKIYYVMEYAAGGELLRRVSSAGRMTENLARRYFQQLISAVAYCHSHGVFHRDLKLENLLVDENMDLKVTDFGLSAGRSQFGPDGLLHTICGTPAYVAPEILAKKGYRGGSVDIWSCGVILFTIVAGYLPFNDYNITLLYRKIYRGQFRYPKWVSCDFKRFVSRLLDRDPETRITIDEILKDPWFCRGGYKYPTRVVPELDEDHVMLKDLNAFDLISFSSGFDISGLLTHSEYLNCVERFVSKEEPESILERVKIMGAKMERVRVEKDENACAGVRLEGLDGNYVIAVRIYRLMNELVVIEVKRKEKKVGGGNFWRTRLKPLLLELALR* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2492 424 Pfam Protein kinase domain 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2492 424 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165
Amo12g2492 424 PANTHER - 10 421 - -
Amo12g2492 424 CDD CIPK_C 306 401 - -
Amo12g2492 424 Gene3D Transferase(Phosphotransferase) domain 1 107 283 - -
Amo12g2492 424 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 10 421 - -
Amo12g2492 424 Gene3D Kinase associated domain 1, KA1 301 422 - -
Amo12g2492 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Amo12g2492 424 ProSiteProfiles Protein kinase domain profile. 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2492 424 SMART serkin_6 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2492 424 SUPERFAMILY Protein kinase-like (PK-like) 20 289 IPR011009 -
Amo12g2492 424 Gene3D Phosphorylase Kinase; domain 1 10 106 - -
Amo12g2492 424 Pfam NAF domain 304 362 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2492 Amo-Chr12 108141787 108143559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2492 12 400 CBL-interacting serine-threonine protein kinases AT2G30360 56.456 4.04e-159 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Amo12g2492 Pkinase 1.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2492 - K12761 gmx:100788245 452.21