Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2484 ATGGAAGAGAAAGGAGGCGTGCTTATGCAACGATACGAGTTAGGGAGATTGTTAGGCCAAGGAAATTTCGCCAAAGTTTACCATGGAAGGAGCCTTATAACCGGAATAAGCGTGGCGATCAAAATAGTCGATAAAGAGAAGGTTCTGAAAGTGGGGATGATTGATCAGATTAAGCGCGAAATTTCAGTGATGAGACTAATCAGGCATCCACATGTGGTTGAGCTTTATGAGGTAATGGCCACCAAAACCAAGATCTACTTTATCATGGAATATGTTAAAGGTGGCGAGCTCTTCAACAAGGTACTAAAAGGAAAGATCAAGCAGGATGATGCTAGAAGATATTTTCAACAATTGATCAGTGCTGTGGACTATTGCCACAGCCGAGGCGTTTGCCACCGGGATCTCAAGCCGGAGAATCTTCTATTGGATGAAAATGGGAATTTGAAGGTCTCAGATTTCGGGCTAAGTGCGATTGCTGAATCTAGACACCAAGATGGACTACTCCATACTACTTGTGGCACCCCTGCCTATGTTGCTCCAGAAGTGATACTTAGAAAGGGCTATGATGGCTTCAAAGCTGATATATGGTCTTGTGGAGTCATACTTTATGTTCTTTTGGCAGGTTATCTTCCTTTCCGAGATTCGAATCTGATGGAAATGTATAAGAAGATTGGAAAGGGACAATTCAAGTTTCCGAGTTGGTTTCCTCCGGATGTGAAGAGATTACTGTCTAGAATCTTGGATCCTAATCCAAGGACAAGGATATCAATGGCTAAAATCATGGAAAGTTCATGGTTCAAGAAAGGGTTAGAGAAGCCAATTGTTACTAATGACAATGAAGAGAAAGAGTTAGCTCCCTTGGATGCTGATGGAGTGTTTGGATCATGCGAAAATGGCGGCCCTGCTGCTGAATCAACACCTGAATTTTCAAAGCCAAGCAACTTAAATGCGTTTGATATTATCTCCTATTCGTCTGGATTCGACTTGTCCGGCTTATTCGAGGAAACTGATCAAAAGAAACAAGTCAGGTTCACATCTAACAAGCCTGCATCCATCATAATCTCTAAACTAGACGAAATTTGCAAGCGCCTTCGACTGAAACTTAGGAAGAAAGATAGAGGTTTGATCAAGCTAGAAGGTACTAATGCTGGCAGAAAAGGGCCATTGGGAATTGATGCCGAGATTTTCGAGATCACGCCGGTGTTCCACCTTGTTGAACTCAAGAAATCAAGTGGAGACACATTGGAATACAAAAAGCTGCTACAACAAGAAGTTAGGCCTGCACTTAAGGACATTGTTTGGAACTGGCAAGGAGAAGAACCACAAGGAATGCTGCAGATACAGCAACAAAATCATTCACAATCTGCCCAATCAGATGTGATAACACAATCAAATTAG 1398 0.422 MEEKGGVLMQRYELGRLLGQGNFAKVYHGRSLITGISVAIKIVDKEKVLKVGMIDQIKREISVMRLIRHPHVVELYEVMATKTKIYFIMEYVKGGELFNKVLKGKIKQDDARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDENGNLKVSDFGLSAIAESRHQDGLLHTTCGTPAYVAPEVILRKGYDGFKADIWSCGVILYVLLAGYLPFRDSNLMEMYKKIGKGQFKFPSWFPPDVKRLLSRILDPNPRTRISMAKIMESSWFKKGLEKPIVTNDNEEKELAPLDADGVFGSCENGGPAAESTPEFSKPSNLNAFDIISYSSGFDLSGLFEETDQKKQVRFTSNKPASIIISKLDEICKRLRLKLRKKDRGLIKLEGTNAGRKGPLGIDAEIFEITPVFHLVELKKSSGDTLEYKKLLQQEVRPALKDIVWNWQGEEPQGMLQIQQQNHSQSAQSDVITQSN* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2484 465 CDD CIPK_C 316 430 - -
Amo12g2484 465 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2484 465 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2484 465 Pfam NAF domain 312 370 IPR004041 GO:0007165
Amo12g2484 465 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 447 - -
Amo12g2484 465 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Amo12g2484 465 Gene3D Transferase(Phosphotransferase) domain 1 4 310 - -
Amo12g2484 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Amo12g2484 465 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Amo12g2484 465 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Amo12g2484 465 Gene3D Kinase associated domain 1, KA1 311 435 - -
Amo12g2484 465 CDD STKc_SnRK3 11 265 - -
Amo12g2484 465 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2484 465 PANTHER - 2 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2484 Amo-Chr12 107994721 107998121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2484 1 442 CBL-interacting serine-threonine protein kinases AT5G58380 65.275 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Amo12g2484 Pkinase 5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2484 K07198 - gmx:100815651 770