Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2480 ATGGCTATTTCACCGCAAACTTTCCCTCCCAGAAAACGACGACCCTCAGCAGGGTCGTTTATCTCGCCRAAGCTAAACGACATCAACCTCCTCCACTCCCTCCTCCATCTAACGACACAAATAAGTTCCATAAACCGTTCAACGACACTGCTTCTGCTTAAACGCAGCGCCAATGCTGTCGTTCGCAAGGCGAAGCTACTCGCCGTTCTATTCGAGGACCTAATACGAAATTCCGATTCTGGCCTCRCTTCTTCTTCTTCTTCGTCATCGTTTCTCCTCTGCCTGGAAGAGACATACATCGTTCTGCACCGAATCAAAACCCTAATTGAAGATTGCTCCAACGGAAGCAAGTTCTTCTTCCTCATGCAAATCGAAACCGTCGCCGACAACTTCCACAAACTTACCGGAGAACTCTCCACGCTCCTTGACATCTTCCCGGTACACGACCTAGACCTGAACGACGACGTTCAGGARCTCGTGRTTCTAATCAGAAAACACTGCTTGCAATCGAAACCGGTGATAGAGGATTCAGAAAWAGAGCTCCGAAACGAGGTGGTTTCGGTGCTCGAGAGTATCAAGAACGAGATCRTACCTGACCGGAGCAAACTCGCTTCGATCTTCGAGAGGTTGGAGATTCGCGATTCRTCGAGCTGCAGGGCAGAGATTGAGTGCTTGGAGGAGGAGATCCAGAATCGGAGCGAGGAGAATTCCAAGTCTGAGATCGTCGCCTTGATCGGTCTCGTTCGCTACGCAAAGTGCGTCCTCTTCGGCGCTTCAACCGCCGCCGCGGCGTCTTCTTCAGTGGAGGTTCAACGGCGGAAACAGCCRTCGGAGTTAGTTGTTCCGGCGGACTTCCGGTGTCCTATAAGCCTCGAGCTCATGCGTGATCCCGTCGTCGTGGCGACAGGGCAGACGTACGATCGTGAATCGATCAAGCTCTGGATGGATTCTGGACACAACACGTGTCCAAAAACGGGTCAGACCTTGGCCCACACAGAACTCATACCAAATCGCGCGTTGAGAAACATGATAGCATTGTGGTGCCGCGAGWAGAAGATTCCCTTCGATGCAGAAACCGTTACCGGAAGGCCTATAAGCCGCGTAACAAACAAGGCCGCGCTTGAAGCCACGCGCATGACGGCGTTGTTTCTGGTCAACAAACTWAAGGTCCCTATAACTAACTCTCAGTCTATGGAGGACTCAAACGCCRTCGTTTACGAGCTTCGTTTTCTGGCCAAAACAGACTCGGATAGCCGAGCCTGCATCGCGGAAGCTGGAGCCATCCCGCTTTTGGTTCGGTATCTCAGCTTCGACGTTGGGGTTCATAGTCCAAGCCTGCAGGTTAACGCCGTTACTACGATATTGAACCTTTCAATATTGGAGGCGAACAAAACGAGGATAATGGAGACTGACGGCGCACTTAACGGAGTTGCGGAGGTTTTGCGTTCGGGTGCCACGTGGGAAGCTAAGGCAAATGCAGCGGCCACGGTGTTCAGTTTGTCAGGTGTTCCAGCTTATAGAAAGAGACTTGGAAGGAAGACACGTGTYGTGAATGGATTGGTCCAGTTGGCAAGATGTGGACCCGAGGGACCCAGGAGGGATGCATTGGCGGCAATTCTGAGTTTGGCGGCGGATAGRGAAAGCGTGGCAAAGTTAGTGGAGGGCGGCGCGGTGGARATGGCGGTGGAGGTGATGGTGGCCGTACCGGAGGAGGCGGCAACTGTGTTGGAGGCCGTGATTAAGCGCGGTGGGTTGGTGGCMGTGGCAGCGGCATACAATGGGATCAAGAGGCTGGGAGCAGTGTTAAGAGAAGGTTCAGAGAGGGCAAGGGAAAGCGCCGTGGCGACATTGGTGACAATGTGCCGGAAAGGGGGGTCGGAAGTGGTGGGGGAGTTGGCGGCCATTCCRGGGGTAGAGAGAGTAATTTGGGAGATAATGGCAGTTGGAAGCGTCCGGGGGAGGAGAAAGGCGGCAACATTATTGAGAATCCTACGCCGGTGGGCGGCCGGGTTAGATGGCGTAGAGATAGAAGGGTTTTCAACAACCACCATGTCTTCCGCAACCACTGTGGTGGTTCCAACTTCCAATTCAGTAGCGCAGTAA 2103 0.5297 MAISPQTFPPRKRRPSAGSFISPKLNDINLLHSLLHLTTQISSINRSTTLLLLKRSANAVVRKAKLLAVLFEDLIRNSDSGLXSSSSSSSFLLCLEETYIVLHRIKTLIEDCSNGSKFFFLMQIETVADNFHKLTGELSTLLDIFPVHDLDLNDDVQELVXLIRKHCLQSKPVIEDSEXELRNEVVSVLESIKNEIXPDRSKLASIFERLEIRDSSSCRAEIECLEEEIQNRSEENSKSEIVALIGLVRYAKCVLFGASTAAAASSSVEVQRRKQPSELVVPADFRCPISLELMRDPVVVATGQTYDRESIKLWMDSGHNTCPKTGQTLAHTELIPNRALRNMIALWCREXKIPFDAETVTGRPISRVTNKAALEATRMTALFLVNKLKVPITNSQSMEDSNAXVYELRFLAKTDSDSRACIAEAGAIPLLVRYLSFDVGVHSPSLQVNAVTTILNLSILEANKTRIMETDGALNGVAEVLRSGATWEAKANAAATVFSLSGVPAYRKRLGRKTRVVNGLVQLARCGPEGPRRDALAAILSLAADRESVAKLVEGGAVEMAVEVMVAVPEEAATVLEAVIKRGGLVAVAAAYNGIKRLGAVLREGSERARESAVATLVTMCRKGGSEVVGELAAIPGVERVIWEIMAVGSVRGRRKAATLLRILRRWAAGLDGVEIEGFSTTTMSSATTVVVPTSNSVAQ* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2480 700 SUPERFAMILY ARM repeat 392 664 IPR016024 -
Amo12g2480 700 Pfam U-box domain 281 351 IPR003613 GO:0004842|GO:0016567
Amo12g2480 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 356 IPR013083 -
Amo12g2480 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 472 IPR000225 GO:0005515
Amo12g2480 700 Gene3D - 383 590 IPR011989 -
Amo12g2480 700 SUPERFAMILY RING/U-box 280 354 - -
Amo12g2480 700 Pfam Armadillo/beta-catenin-like repeat 416 458 IPR000225 GO:0005515
Amo12g2480 700 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Amo12g2480 700 Coils Coil 215 242 - -
Amo12g2480 700 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Amo12g2480 700 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 681 - -
Amo12g2480 700 PANTHER U BOX DOMAIN-CONTAINING 11 681 - -
Amo12g2480 700 CDD RING-Ubox_PUB 285 327 IPR045210 -
Amo12g2480 700 SMART arm_5 415 459 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2480 Amo-Chr12 107909593 107912016 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2480 9 698 U-box Gene Family AT5G01830 54.978 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2480 - - cam:101506886 939.102