LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo12g2479	ATGTACAAGAAGGGGAGATTAGTTGGATGCAATAATAATGGAGCCATAGCTCAGTTTGGATATGTTGAGATTGATCCATCTGGAAGATATGGCCGTTTCAGAGATGTTTTGGGCAAAGGAGCAATGAAGGTAGTGTATAGGGCATTTGATGAAGTGCTTGGAATAGAAGTGGCTTGGAACCAAGTCAAACTTGGTGATGTTTTTCATTCACCAGACCAATTACAACGTCTTTATTCAGAGGTCCATCTTCTCAAGAACCTTGACCATGAATCAATCATGACCTTCCATGACTCTTGGATCGATGTCCACTCTAGATCCTTCAACTTCATCACTGAATTGTTCACCTCTGGCACCCTAAGAGAGTATAGAAAGAAGTACAAGAGAGTAGATATAAGAGCAATTAAGAATTGGGCAAGGCAGATTCTAAGRGGATTGGAGTATTTACACAGCCATGATCCACCAGTGATTCATAGAGACATMAAATGTGACAAYATATTTGTGAATGGGCATTTGGGTWAGGTCAAGATTGGTGACTTAGGCCTTGCAGCAATTCTTCGTGATAGTTCACAAYAYGCACACAGTGTCATTGGTACACCGGAATTTATGGCACCTGAATTGTATGAAGAGGAATACAATGAGCTTGTTGATGTCTATTCATTTGGGATGTGTATGATTGAGTTGTTCACTTCTGAGTTCCCATACAGTGAATGCTCCAACCCAGCTCAAATTTACAAGAAAGTTACTTCAGGGAAGCTACCAAATGCCTATTACAGAATCAATGATTTGGAGGCCCAAAGATTTATTGGAAAGTGTTTGGCAAATGTCTCAGACAGGCTGCCAGCAAAGGACCTYTTGTTGGACCCATTTTTGGMAATGGACCAACTTCACTCACCACTACAAAGCCCAAGCCCAAGATCAAGCCCAACATTACTCAATTTCAATGCCAAAGAGAAGAAGAAACCTTCAATCATGACTGAAGAAACAAAGGGCACACACATGACAATAACAGGCTCCATGAATGAAGAGGATGACACAGTTTTCCTTAAAGTTCAAATTTCCAACCAAAGTGGGAGCACAAGAAACATATACTTCCCATTTGACACCATAAATGACACAGCCATTGATGTGGCAATGGAGATGGTTAAAGAACTTGAAATTAGTGACTTGGAACCAATGGAGATTGCTGAAATGATAGAAGAAGAGGTATCAGCTTTGGTTCCAACATGGAGGGACTTGGGAAATTCTATTAAGTATCAAAGACAACATAGCTTTAACTATGAACAAGAAGAAGATGATTATGATGATGATGATGTTAGCAATAATCACAATCCTTTCTTCTCATTGTCTTCTCCCTCTTCCTCTCATGGTTCTCTCCCAATGCTTTACCAAAATATTACACAAATTGGTGGAAACCATTACCCACTTTCTCATGATTTGCCTCAAGATGATCCCCTTATGAATGATGATGCAAGCTCTCAAAGTTCTTTGGATTCCTTCAAGTATTCCCATTTACACTACTTGGACGCAAGCAATGAAGATAATGATCATGTTTCAACTCTTCTAACTATCAACAACAAGTGCACAAGATTTTGCCCTAGAGAAGAGGTGGTGGAGGCTGATTTCACCAACCAGTTTTGCAACATGAGAATGGATCCTTGCAGTAGGTACCATAAGCCTATGGTAGGGCATGGATTCCCAAGACTAACTAGGATTCAATCATATGTTGATGTGAGGAGGCAACAAATACAGACATCATTGGTGGAGGAGATACATAAAAGAAGGATGTTCAAGACTGTTAATGCCATTGAGAACATTGGATTTCAGAATCCCAAATGA	1836	0.3981	MYKKGRLVGCNNNGAIAQFGYVEIDPSGRYGRFRDVLGKGAMKVVYRAFDEVLGIEVAWNQVKLGDVFHSPDQLQRLYSEVHLLKNLDHESIMTFHDSWIDVHSRSFNFITELFTSGTLREYRKKYKRVDIRAIKNWARQILRGLEYLHSHDPPVIHRDIKCDNIFVNGHLGXVKIGDLGLAAILRDSSQXAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCMIELFTSEFPYSECSNPAQIYKKVTSGKLPNAYYRINDLEAQRFIGKCLANVSDRLPAKDLLLDPFLXMDQLHSPLQSPSPRSSPTLLNFNAKEKKKPSIMTEETKGTHMTITGSMNEEDDTVFLKVQISNQSGSTRNIYFPFDTINDTAIDVAMEMVKELEISDLEPMEIAEMIEEEVSALVPTWRDLGNSIKYQRQHSFNYEQEEDDYDDDDVSNNHNPFFSLSSPSSSHGSLPMLYQNITQIGGNHYPLSHDLPQDDPLMNDDASSQSSLDSFKYSHLHYLDASNEDNDHVSTLLTINNKCTRFCPREEVVEADFTNQFCNMRMDPCSRYHKPMVGHGFPRLTRIQSYVDVRRQQIQTSLVEEIHKRRMFKTVNAIENIGFQNPK*	612

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo12g2479	611	SUPERFAMILY	Protein kinase-like (PK-like)	33	291	IPR011009	-
	Amo12g2479	611	CDD	STKc_WNK	29	290	-	-
	Amo12g2479	611	Pfam	Protein kinase domain	35	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo12g2479	611	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK5-RELATED	11	610	-	-
	Amo12g2479	611	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	155	167	IPR008271	GO:0004672\|GO:0006468
	Amo12g2479	611	Gene3D	Transferase(Phosphotransferase) domain 1	114	295	-	-
	Amo12g2479	611	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	11	610	-	-
	Amo12g2479	611	ProSiteProfiles	Protein kinase domain profile.	31	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo12g2479	611	MobiDBLite	consensus disorder prediction	427	449	-	-
	Amo12g2479	611	MobiDBLite	consensus disorder prediction	472	492	-	-
	Amo12g2479	611	Gene3D	Phosphorylase Kinase; domain 1	17	112	-	-
	Amo12g2479	611	SMART	serkin_6	31	290	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo12g2479	Amo-Chr12	107835809	107843018	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo12g2479	19	434	MAP Kinase Kinase Kinase	AT3G51630	66.826	0.0	573

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Amo12g2479		Pkinase	5.8e-45	CL0016