Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2463 ATGTCAATGTCCTGCAAGGATGGTAAACCAGGATTGGATAACGGCAAGTATGTCCGTTACACACCTGAGCAGGTTGAGGCCCTCGAGAGGCTCTACCATGACTGCCCCAAACCCAGCTCCATTCGCCGCCAGCAGCTCATCCGCGAGTGCCCCATTCTCTCCAACATTGAGCCCAAGCAAATCAAAGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAGAGGAAAGAGGCTTTGCGACTTCAGGCTGTGAATAGGAAACTGACAGCCATGAACAAGCTGCTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTTTCTCAGTTGGTGTATGAAAATGGCTACTTTCGTCAGCATACCCAAAATACTTCTCTGCCAACCAAAGACACAAGCTGTGAATCAGCCGTGACTAGTGGTCAACGCAGCTTGACAAATCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCACGAGCCTGCGGCCTGGTGGGTCTAGAACCCACAAGGGTTGCAGAAATACTCAAAGATCGACCTTCATGGTTCCGTGATTGCCGAGCTGTTGATGTGCTGAATGTGCTGCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCGCCAACCACGTTGGCACCTGCTCGCGACTTCTGGTTGCTGCGCTACACATCTATGTTGGAAGATGGAAGCTTAGTGATCTGTGAGAGGTCTCTTAAGAATACACAAAATGGTCCAACCATGCCTCCTGTGCAGCATTTTGTTAGAGCAGAGATGTTGCCTAGTGGGTACCTGATAAGACCTTGTGAAGGAGGTGGCTCCATCATTCATATTGTTGATCATATGGATTTGGAGCCTTGGAGTGTTCCTGAAGTATTGCGTCCACTGTATGAATCATCAACGGTGCTGGCTCAGAAGACGACAATGGCAGCCCTACGTCAGCTAAGGCAGATTTCACATGAAGTTTCTCAGTCTAATGTCACTGGGTGGGGCAGACGACCAGCCGCTCTTCGAGCACTTGGCCAGAGACTGAGCCGTGGTTTCAATGAGGCACTCAATGGATTTACTGATGAGGGATGGTCAACGATTGGTAATGATGGTGTTGATGATGTTACAATTCTAGTGAACTCATCACCTGACAAGTTGATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCTTCTGTCAGTAATGCAGTTTTATGTGCCAAAGCTTCAATGCTGTTACAGAATGTGCCTCCAGCCATTCTTCTGAGGTTCCTGCGGGAGCACAGGTCAGAATGGGCAGACAATAACATGGATGCGTACTCAGCTGCTGCCATTAAAGTTGGTCCTTGTAGCTTATCAGGATCTCGCGTAGGAAATTATGGGGGTCAAGTTATTCTTCCTCTAGCCCACACTATTGAGCATGAGGAGTTTCTGGAAGTGATTAAATTGGAAGGAATTGCTCATTCTCCTGAAGAAGCAATGATGCCCAGAGAAGTCTTTCTTCTGCAATTATGTAGTGGAATGGATGAGAATGCTGTTGGAACCTGTGCTGAACTTATTTTTGCTCCAATWGATGCATCCTTCGCTGATGATGCCCCCCTTCTGCCTTCAGGATTTCGCATCATTCCTCTTGATTCTGGAAAGGAAGCATCCAATCCAAATCGTACCCTTGACCTTGCATCTGCCCTGGATATTGGCCCCACTGGAAACAGAGCTTCGAATGAAACTTCTGGAAATTCTGGCTCTGTGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGCCATATGCAAGAGCATGTAGCTTCCATGGCACGCCAGTATGTTCGCAGCATTATATCATCAGTCCAAAGGGTAGCATTAGCGCTTTCACCTTCTCATTTGAGTTCACAAGCTGGGCTTAGGACACCATTAGGCACTCCTGAAGCACAAACTCTTGCTCGCTGGATCTGCAATAGCTACAGGTGCTACTTGGGTGTTGAGCTACTTAAATCGAATAATGAGGGGAACGAATCTCTTCTCAAGTCATTGTGGCATCACTCGGATGCATTATTGTGCTGCACTCTAAAGGCATTGCCAGTGTTTACTTTTGCAAACCAAGCAGGGCTTGACATGCTGGAGACTACCTTAGTTGCACTGCAGGATATAACTCTAGAGAAGATATTTGATGATCATGGCAGAAAGATTCTCTGCTCAGAGTTTCCCCAAATCATTCAACAGGGTTTTGCATGCCTTCAAGGTGGCATATGTCTTTCAAGTATGGGGCGACCAATCTCTTACGAAAGAGTAGTGGCTTGGAAGGTGCTGAATGAAGAGGAGAATGCACATTGTATTTGCTTTATGTTTATGAATTGGTCTTTTGTTTAA 2514 0.4666 MSMSCKDGKPGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEALRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTSLPTKDTSCESAVTSGQRSLTNQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSMLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRQLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEALNGFTDEGWSTIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEEAMMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASNPNRTLDLASALDIGPTGNRASNETSGNSGSVRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSQAGLRTPLGTPEAQTLARWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDALLCCTLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKILCSEFPQIIQQGFACLQGGICLSSMGRPISYERVVAWKVLNEEENAHCICFMFMNWSFV* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2463 837 Gene3D - 194 375 IPR023393 -
Amo12g2463 837 SUPERFAMILY Homeodomain-like 13 78 IPR009057 -
Amo12g2463 837 SMART HOX_1 13 79 IPR001356 GO:0003677
Amo12g2463 837 Gene3D - 12 80 - -
Amo12g2463 837 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Amo12g2463 837 SMART START_1 159 369 IPR002913 GO:0008289
Amo12g2463 837 MobiDBLite consensus disorder prediction 120 154 - -
Amo12g2463 837 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 837 - -
Amo12g2463 837 MobiDBLite consensus disorder prediction 120 149 - -
Amo12g2463 837 Coils Coil 81 112 - -
Amo12g2463 837 CDD START_ArGLABRA2_like 154 369 - -
Amo12g2463 837 CDD homeodomain 16 76 IPR001356 GO:0003677
Amo12g2463 837 Pfam MEKHLA domain 694 836 IPR013978 -
Amo12g2463 837 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Amo12g2463 837 SUPERFAMILY Bet v1-like 159 368 - -
Amo12g2463 837 CDD bZIP 68 107 - -
Amo12g2463 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 837 IPR044830 GO:0003700
Amo12g2463 837 Pfam START domain 160 368 IPR002913 GO:0008289
Amo12g2463 837 ProSiteProfiles START domain profile. 150 365 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2463 Amo-Chr12 107561200 107567813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2463 1 789 Homeobox Transcription Factor Family AT1G52150 86.616 0.0 1425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo12g2463 START 1.9e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2463 K09338 - zju:107428556 1597.79