Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2451 ATGGAGTCAAGGAGCTGCATGAACGTGGTATGCGCCACCTTGACGTCGATTCAATGGCGCAAAGGTTGGGCCTTGCGATCCGGCGAATTTGCCGATCTCTGTGATAAGTGCGGTTCTGCATATGAGCAATCAACATTTTGTGAAAAATTCCACTCAAATGATTCTGGTTGGAGAGAGTGTGTTTCATGTGGCAAGCGTCTACATTGTGGATGCATTGCCTCTAGGTCTCAGCTTGAGTTGCTAGATTCCGGTGGTGTAAGCTGTATAAATTGCACAAGAAATTCAGGACATCAACTTGTTGCGGGTACTGAAAAGCCTACTGGCTCTGGGGCATCAAAGATAAAGAACGTCAGTGAACAACTGTGTCCATCTCTGGCTAACCAATTAAATGTCAGGGGTATGCAAGTAGGACATTCCACAGATAGTGATGGGCTGAGATGGTGGCTTAAACCTCATAATCCTGATGCAAATGTCCCTTTTCCAGAGATAAAAACAGAGGAAGGTTTGCCTTCTACTGCAGAACTTGGAAGCCAATTGATATCACAATTTCGCTGCAAATCTAATGGTTCATCTAGGGTTGCCAAATCAGACAACTGCCAGGCAGATATGGAGATGCAAGATATATATGAATCATTGGCACATGCAAATTTGAGTATGACTCTTGCTTCTCCTTCAGGAAATTCAAATCCATTTCATAGTGCCATTGCTGATGAAAGGGAACAAAGTAAAACCTCGCCTCCACTTTTACTTGGGTCTAGGTCTCGCCACCTTTTACCAAAGCCTCCTAGGTCAAGCCTTGGTTCAAGCTTAGAAACAAATGCAGCTATGGTGTCCCAAATCCGTGTAGCAAGGCCTCCTGCCGAGGGACGTGGAAGAAATCAGCTACTTCCCCGTTACTGGCCTAGGATTACAGATCAAGAGTTGCAACAAATATCAGGAGATTCAAATTCCACCATTGTGCCACTCTTTGAGAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTAGTTTTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCAGAGGGCCTTCCTCTACGAATCCAAGATGTGAAAGGAAAAGAATGGGTGTTCCAGTTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTCTAGAAGGCGTAACTCCTTGTATTCAGTCTATGCAACTGCAAGCTGGAGATACTGTAACTTTTAGCCGGATGGACCCTGAAGGGAAACTTATTATGGGGTTTAGGAAGGCAACAAATTCTGCTGCAGTACAGGAATCTCATCCGTCTAATATGCCCAATGGCTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTATTCTGGCCTTCTCCAGTCACAAAAGGGAAGTTCAGAATCCCCGCTAAATACGCTGTCTAAAAAATGGAATTCAGCTGGTGGTGACATGAATTGGCATAATATTGAAATTCCTGAAAAAAGGACAAGGGAGGGATCGCTTTTGCCGGCTGTGCTGGTTCCAGAGAAGAAAAAAACCAGGAATATTGGATCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCGCTGGAGTTGAAGCTTACATGGGAAGAGGCACAGGATTTGCTTCGTCCTCCTCCAACTGCTAAACCAAGCATTGTCATGATTGAGGATCATGTATTTGAAGAATATGAAGAACCTCCTGTCTTTGGAAAGAAGAGTATATTCGTAGCCCGCTCTGCTGGGATAAATGAGCAGTGGACACAGTGTGATAATTGCTCAAAATGGAGGAAGTTACCAGTTGATGTACTTGTTCCCCCTAAGTGGACATGTGCTGATAATTTGTGGGATCAGAGCAGGCGTGCATGTTCTGCTCCAGACGAATTGAGCCCAAGGGAGATGGATAATCTCTTGCGACTGATCAAGGAATTCAAGAAACAGCGAATGACTGCCAGCCAAAGACCAACCCTAGAACATGAATCTTCCGGATTGGATGCTTTGGCAAATGCTGCAATACTTGGAGATGATGCAGGTGACCCTAGCAGAGCACCAGTTGCTACCACTACGAAGCACCCTCGGCATAGACCTGGTTGTTCCTGTATTGTATGTATCCAACCACCTAGTGGGAAGGGCAAGCACAAACCTACATGCACCTGTAACGTGTGCATGACAGTCAAACGTAGGTTTAAAACCCTTATGATGCGAAAGAAGAAGCGGCAATCTGAGCGTGAAGCAGAGATTGCTCAGAGAAATCAGCAGTCATGGGTGACCAAGGATGAATCTGAAGTAGAAAGCACCTCTCAGCATTTAACTCGAGGTGATGGTTTGGAGAATGAAGCAAGGGTGCCAAACGAGTTAGATTCAAGGAGTCAAGACCATGCGGATGATGCAGCCAAGGGACACTTAGATTTGAACTGCCAACCTGATCGAGAAGATGCTCAAGCTGGGACAAACAGCATGAGCATGATGAGTCTTCTTGAAGAAGCAAATCTGCCATTGGAGACCTACCTGAAGAAAAATGGTCTTACTAGCTTGATGTCAGAACAGGAAACAAATTCAGCCTCAAATATGCAGGCACAGACGACCAATGACAGTGAGGGAAAACAAAATGAGGATTGTTGTACTCCTTCTGCTGTTCAGGAGCAGGAAAGCAGTCCCGAAGAGAGCAGTGAGCAAGACAAAGGCCAAAACAATTCATGA 2721 0.4473 MESRSCMNVVCATLTSIQWRKGWALRSGEFADLCDKCGSAYEQSTFCEKFHSNDSGWRECVSCGKRLHCGCIASRSQLELLDSGGVSCINCTRNSGHQLVAGTEKPTGSGASKIKNVSEQLCPSLANQLNVRGMQVGHSTDSDGLRWWLKPHNPDANVPFPEIKTEEGLPSTAELGSQLISQFRCKSNGSSRVAKSDNCQADMEMQDIYESLAHANLSMTLASPSGNSNPFHSAIADEREQSKTSPPLLLGSRSRHLLPKPPRSSLGSSLETNAAMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSAAVQESHPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGSSESPLNTLSKKWNSAGGDMNWHNIEIPEKRTREGSLLPAVLVPEKKKTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTAKPSIVMIEDHVFEEYEEPPVFGKKSIFVARSAGINEQWTQCDNCSKWRKLPVDVLVPPKWTCADNLWDQSRRACSAPDELSPREMDNLLRLIKEFKKQRMTASQRPTLEHESSGLDALANAAILGDDAGDPSRAPVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQQSWVTKDESEVESTSQHLTRGDGLENEARVPNELDSRSQDHADDAAKGHLDLNCQPDREDAQAGTNSMSMMSLLEEANLPLETYLKKNGLTSLMSEQETNSASNMQAQTTNDSEGKQNEDCCTPSAVQEQESSPEESSEQDKGQNNS* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2451 906 MobiDBLite consensus disorder prediction 682 702 - -
Amo12g2451 906 ProSiteProfiles B3 DNA-binding domain profile. 323 424 IPR003340 GO:0003677
Amo12g2451 906 Coils Coil 641 661 - -
Amo12g2451 906 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 860 - -
Amo12g2451 906 MobiDBLite consensus disorder prediction 238 271 - -
Amo12g2451 906 Pfam CW-type Zinc Finger 593 635 IPR011124 GO:0008270
Amo12g2451 906 Gene3D - 591 647 - -
Amo12g2451 906 SMART B3_2 323 423 IPR003340 GO:0003677
Amo12g2451 906 MobiDBLite consensus disorder prediction 740 787 - -
Amo12g2451 906 ProSiteProfiles Zinc finger CW-type profile. 588 638 IPR011124 GO:0008270
Amo12g2451 906 Pfam B3 DNA binding domain 323 422 IPR003340 GO:0003677
Amo12g2451 906 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 860 - -
Amo12g2451 906 CDD B3_DNA 321 422 IPR003340 GO:0003677
Amo12g2451 906 Gene3D - 301 428 IPR015300 -
Amo12g2451 906 SUPERFAMILY DNA-binding pseudobarrel domain 320 422 IPR015300 -
Amo12g2451 906 MobiDBLite consensus disorder prediction 754 768 - -
Amo12g2451 906 MobiDBLite consensus disorder prediction 853 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2451 Amo-Chr12 107369425 107377390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2451 1 859 B3 DNA Binding Superfamily AT4G32010 50.406 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo12g2451 B3 2.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2451 - - gmx:100778833 1531.54