Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2450 ATGGCGGCATCATTGGTAGGAGGAGCTGCCATAGGAGCTGTGTTTGGAGAACTCCTGAAAGCAGTTATAGATATGAAAGACAGAGCTGTTATGTTCAAACCAACCTTAGCATACCTCAGAACAACGTTAACGGCGATTGATCCGGTGATCAAGGAGATAGAACAACAAAACAACGAACTGGGTCGCGCGAACGCCGAGCTAGAGTTGTTGATCAAGGAAATGGAAGAAGGCACAAAGCTTGTTTACAAGTGTTCCAAAATCCACAAGCTGAATTTTCCAGCTAGGATTCGGTACCAAGAACAATTGGTAGCACTGGTGGAGTCTCTGGTGAGGTTCTTTATCATTGATATGCAGGCTCAGAACGCAAGAGATTTGAAAGAGACGTTGATGAAGGTTAGAAGAATACATAGTGCGGTTAATAAGATGCAATCGAATAGCAATGAAGAAACTACTGCTGGTGGTGGTTCAGTTTCTGAATCTGATTCTGCTAACGTACCTGTGGAGTTGAATCAGATAGATGTAAATGATGAGACTACTGTCACAATTCAGCAGCAAAATGATGAGAATGTAACGGAAATAACTAACTCTGTTTCGGAAATCACAGTCCAGTTGGAGACCCTTCGGAATGATTCTGTTGAGCAAGTCATGGAAGATGGCACTAGACTCTTACACATTGCTAGCCAAACTAAAGAAGAGGCAAATAATAGTCAAGAAGAAAAGCAGTTGACGGTTGTCAAATCCTATGATCAATCATATACAGATCAGAAGAGATTCATGGGTATATGTCTGCCTACAACACCAATTCGACGTAAGAAAAGTGGTGGAAAATTCACTTTTGTTGAAGGGTGTCCTTACAAATTTGATATTGAGGATTTGTTGAGAGGTTCTGCTGAAGTTCTTGGACATACAAGTTATGCAACTACCTACACCACAGAGATGAAGAATGGCGTAACACTAGTTATAAAGAGATTAAAAGATGTGGTGGTAGACAAGCAAGAATTTGAACAGAAGATAAAGATTGTGCAAAGAATTTCTCAGCACCCAAATGTTCTGTCTCCTCTTGCCTGCTATTGTTCCAATGATGAAAATCTACTGATTTATGAGTACATGCCAACAGGCAGCTTTTCGAAGCTATTGCATGAAACATCCGAAGATAGAGATGTCCCATTAGATTGGAATTCAAGAATGAAGATTTCACTTGGAGTTGCCAAGGGTCTTGCTCACATCCACTCTCTCGAAGGAGGAACTTATGTCCATGGCAATGTAAGATCATCAAATGTGCTTGTCACAAATGATCATCAAGGTTGCATATCAGATCTCTCAATGGCGTATTCACTAAGTAACTCCTTCGACCAATTTAGAAAAACAGGTTACCAACAAAACGAAGGCTGGTGGTTGGAAGCAATGAAGGAAGAACTGACCCCCCAAAAATGTGATGTGTATAGCTTTGGTGTACTTCTTTTTGAGATGCTAACAGGAAGAGTGCCATCAGAGTATAATGATCTACCAACACATGTTAAGGATCTTGCTATTGACGGCTTTCCTGTGTATGATAGTGCAATTAGTCAAATTTATAAAAAGTATGCCAGGAAGATGAGGGAACTGGCAGAGAAATGTACGTTTCAACGGAAAGAAATACCATCCATGGCTAGTGTTGTTAGGGAAATGGAAGAAATAAGAGCACTTTATTAA 1692 0.4037 MAASLVGGAAIGAVFGELLKAVIDMKDRAVMFKPTLAYLRTTLTAIDPVIKEIEQQNNELGRANAELELLIKEMEEGTKLVYKCSKIHKLNFPARIRYQEQLVALVESLVRFFIIDMQAQNARDLKETLMKVRRIHSAVNKMQSNSNEETTAGGGSVSESDSANVPVELNQIDVNDETTVTIQQQNDENVTEITNSVSEITVQLETLRNDSVEQVMEDGTRLLHIASQTKEEANNSQEEKQLTVVKSYDQSYTDQKRFMGICLPTTPIRRKKSGGKFTFVEGCPYKFDIEDLLRGSAEVLGHTSYATTYTTEMKNGVTLVIKRLKDVVVDKQEFEQKIKIVQRISQHPNVLSPLACYCSNDENLLIYEYMPTGSFSKLLHETSEDRDVPLDWNSRMKISLGVAKGLAHIHSLEGGTYVHGNVRSSNVLVTNDHQGCISDLSMAYSLSNSFDQFRKTGYQQNEGWWLEAMKEELTPQKCDVYSFGVLLFEMLTGRVPSEYNDLPTHVKDLAIDGFPVYDSAISQIYKKYARKMRELAEKCTFQRKEIPSMASVVREMEEIRALY* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2450 563 Pfam Protein tyrosine and serine/threonine kinase 300 502 IPR001245 GO:0004672|GO:0006468
Amo12g2450 563 Gene3D Phosphorylase Kinase; domain 1 272 369 - -
Amo12g2450 563 PANTHER OS05G0588300 PROTEIN 275 561 - -
Amo12g2450 563 SUPERFAMILY Protein kinase-like (PK-like) 298 534 IPR011009 -
Amo12g2450 563 ProSiteProfiles RPW8 domain profile. 1 151 IPR008808 -
Amo12g2450 563 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 3 135 IPR008808 -
Amo12g2450 563 Gene3D Transferase(Phosphotransferase) domain 1 370 562 - -
Amo12g2450 563 MobiDBLite consensus disorder prediction 140 162 - -
Amo12g2450 563 Coils Coil 50 77 - -
Amo12g2450 563 ProSiteProfiles Protein kinase domain profile. 294 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2450 563 PANTHER OS05G0480400 PROTEIN 275 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2450 Amo-Chr12 107363396 107366885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2450 276 560 Receptor kinase-like Gene Family AT5G58300 40.541 3.94e-65 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo12g2450 PK_Tyr_Ser-Thr 1.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2450 - - aip:107625870 1110.13