Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2440 ATGCATTCATCAGAAACCGTACTCCATCTCCTTTTAACACACCCTCTCACTTTGCTCTTCCTTCACCCCTCTACATTGCTTTCTTTCTTCTTCTTCCATTGTAATACTAAACTAGCTACTACTCTGAACTTGACACAAAAAAGAAACCAACATAGATTGTTTCTTTTGTTCATGGAAACCAATAGTTGGCATGTCAATGGTTTCCACGTTAAGGGTAGTAGTAAAGATTCAATCTTTTTGGCCATTTTCATGTTCATTCATGTTTTGGCTTCTACCATTGAACCTGTTGCATGCCACCTGTATGATGGAGTGATTGTGACACAATCAGATTACCAGGCCTTAACGGCCATCAAGCATGAGTTCATTGACCTCAAAGGGGTTCTGAGGAGCTGGAATGACAGTGGTATTGGTGCTTGTTCTGGTGGTTGGGCAGGTATCAAGTGTGTCAATGGTGAAGTCATTGCAATTCAGCTTCCATGGAGGGGTTTAGGCGGAAGAATCTCAGAGAAAATTGGTCAGCTTCAAGCACTCCGGAAGCTGAGTCTCCATGACAATGTTCTTGCTGGTTCTGTCCCTTTTTCTTTAGGATTCCTTCCAAATCTTAGAGGTGTTTATCTCTTCAATAACAAGCTTTCAGGTTCTATTCCTCCTTCTATTGGTAGTTGTCCAATGCTTCAGTCTTTTGATGTTAGCAATAACTCACTCACTGGTAACATCCCTGCTAGTTTGGTAAATTCAAGTAGGATATTCAGGATCAATTTGAGCTTCAACTCACTTACTGGTTCCATTCCTAGGAGTTTCACCATGTCTCAATCCCTTACTATTCTTGCTCTCCAACACAACAATCTATCTGGTTCTATACCAGATTCTTGGGGCTCTATTCCAAGTGAGCTAAGTGCACTTTCAAGGCTTCAAAATCTTGATCTTTCACACAATGCCATCAATGGAAGCTTCCCTGCTAGCTTCTCCAACCTTTCTTCTCTTGTTTCATTGAATTTAGAGGGTAATAAACTTGAGAGTCATATCCCTGATAATTTGGACAGGTTGCACAATCTTTCAATGCTTAACCTCAAGAACAATAAGTTTAATGGCCAAATCCCACCAACAATAGGGAATATCTCTGGCATTAGACAAATTGATGTGTCTGGGAACAAATTCATTGGAGAAATTCCAGACTCACTCACCAAACTAGCAAATCTCACTTCATTCAATGTATCTTACAACAATCTCTCTGGTCATGTCCCTTCACTCCTCACCAAAAGATTCAACTCTAGCTCCTTTGTTGGGAATCTAGAACTATGTGGTTACCTATCAAAACCATGCACTTCACCTCCACCTTCAAATCTTCCAGTCCAAACACCAAACCCTTCTCCAAAGCCACATCATCACAGAAAGCTAAGTACCAAGGACATAATCCTCATTGTAGCAGGTATTCTCCTGTTGATTCTGTTACTCCTGTGCTGCTTTTTGCTATGTTGTTTGATCAGGAAAAGGGCTGCTTCAAGTAGAAAGGGTGCAAAGGCAACATCCAAGGCTTCAGCATCTGCAAGGAGTGTTGAAAAAGGTGGTGCTGGTGGTGAAGTTGAGTCAGGAGGAGAAGCTGGTGGAAAACTTGTTCACTTTGATGGTCCATTTGCCACATTGGAGGATGGTAACCAAGTTGCTGTGAAGAGGTTGAGGGAGAAGAGTACAAAAGGGCCCAAGGAGTTTGAGGCTGAGGTTGCTTCACTTGGCAAAATCAGACACCCAAATCTCTTAGCACTCAGAGCTTATTATTTGGGTCCAAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGCCAAAAGGAAGCTTAGCATCATTCCTTCATGCTCGTGGGCCGGAAATAGTGATTGATTGGCCGACAAGGATGAAGATAGCAATCGGAGTCACACGCGGCTTAAGCTACCTCCACAACCAAGAGAGCATAGTCCATGGCAATCTCACCTCAGGGAACATACTCTTAGATGAGCAAACCAATGCACACATAACAGATTTTGGACTGTCCAGGCTAATGACAACCTCGGCGAACACTAACATCATTGCAACAGCAGGAAGTCTAGGATACAATGCACCAGAGATATCAAAAACAAAGAAACCAAACATGAAATCCGACGTATACAGCCTTGGAGTGATCATCTTGGAGCTCCTAACTGGGAAGCCACCTGGGGAACCAACCAATGGAATGGACTTGCCACAATGGGTGGCTTCCATAGTTAAAGAAGAGTGGACTAATGAAGTTTTTGACTTGGAGCTCATGACAGATGCACCAGCCATAGGTGATGAGCTTCTCAACACATTGAAGCTTGCCCTTCATTGTGTTGATCCTTCACCAGCTGCTAGGCCTGAAGCTCAGCAAAGAAAGTGGTGTGATGACAATATGATACAAGAAGCTATTGAATGTAATAGTTAA 2430 0.4259 MHSSETVLHLLLTHPLTLLFLHPSTLLSFFFFHCNTKLATTLNLTQKRNQHRLFLLFMETNSWHVNGFHVKGSSKDSIFLAIFMFIHVLASTIEPVACHLYDGVIVTQSDYQALTAIKHEFIDLKGVLRSWNDSGIGACSGGWAGIKCVNGEVIAIQLPWRGLGGRISEKIGQLQALRKLSLHDNVLAGSVPFSLGFLPNLRGVYLFNNKLSGSIPPSIGSCPMLQSFDVSNNSLTGNIPASLVNSSRIFRINLSFNSLTGSIPRSFTMSQSLTILALQHNNLSGSIPDSWGSIPSELSALSRLQNLDLSHNAINGSFPASFSNLSSLVSLNLEGNKLESHIPDNLDRLHNLSMLNLKNNKFNGQIPPTIGNISGIRQIDVSGNKFIGEIPDSLTKLANLTSFNVSYNNLSGHVPSLLTKRFNSSSFVGNLELCGYLSKPCTSPPPSNLPVQTPNPSPKPHHHRKLSTKDIILIVAGILLLILLLLCCFLLCCLIRKRAASSRKGAKATSKASASARSVEKGGAGGEVESGGEAGGKLVHFDGPFATLEDGNQVAVKRLREKSTKGPKEFEAEVASLGKIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLASFLHARGPEIVIDWPTRMKIAIGVTRGLSYLHNQESIVHGNLTSGNILLDEQTNAHITDFGLSRLMTTSANTNIIATAGSLGYNAPEISKTKKPNMKSDVYSLGVIILELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMTDAPAIGDELLNTLKLALHCVDPSPAARPEAQQRKWCDDNMIQEAIECNS* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2440 809 CDD STKc_IRAK 546 792 - -
Amo12g2440 809 MobiDBLite consensus disorder prediction 506 534 - -
Amo12g2440 809 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 292 544 - -
Amo12g2440 809 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 52 293 - -
Amo12g2440 809 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 546 792 - -
Amo12g2440 809 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 292 544 - -
Amo12g2440 809 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 52 293 - -
Amo12g2440 809 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 546 792 - -
Amo12g2440 809 Gene3D Phosphorylase Kinase; domain 1 536 606 - -
Amo12g2440 809 Pfam Leucine rich repeat N-terminal domain 108 148 IPR013210 -
Amo12g2440 809 SUPERFAMILY Protein kinase-like (PK-like) 548 792 IPR011009 -
Amo12g2440 809 SMART LRR_typ_2 397 420 IPR003591 -
Amo12g2440 809 SMART LRR_typ_2 325 349 IPR003591 -
Amo12g2440 809 SMART LRR_typ_2 174 197 IPR003591 -
Amo12g2440 809 SMART LRR_typ_2 301 324 IPR003591 -
Amo12g2440 809 SMART LRR_typ_2 198 222 IPR003591 -
Amo12g2440 809 ProSiteProfiles Protein kinase domain profile. 514 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2440 809 Pfam Leucine rich repeat 302 362 IPR001611 GO:0005515
Amo12g2440 809 Gene3D Transferase(Phosphotransferase) domain 1 607 804 - -
Amo12g2440 809 SUPERFAMILY L domain-like 144 441 - -
Amo12g2440 809 Pfam Protein tyrosine and serine/threonine kinase 549 791 IPR001245 GO:0004672|GO:0006468
Amo12g2440 809 Gene3D Ribonuclease Inhibitor 293 442 IPR032675 -
Amo12g2440 809 Gene3D Ribonuclease Inhibitor 105 292 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2440 Amo-Chr12 107075118 107078210 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2440 99 792 Receptor kinase-like Gene Family AT3G51740 63.137 0.0 893
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo12g2440 PK_Tyr_Ser-Thr 5.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2440 - - aip:107625805 1340.48