Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2439 ATGGCCACTGAAATCGTTTCTGGAAACAGGAATTCGTCGAAGAGGCGCAGGTGTGGAAGTGATTCGTTGGAGGACACTCTTGAGAAGTGGAAGAAGAAGAACAGTGACATTCAACATGATTTCTCCACAAATGGGGTGCATGTGGTTCACAAAGTTCCAGCAAAAGGGTCCAAGAAAGGGTGCATGAAAGGTAAAGGAGGGCCTCAGAACTCTGAGTTTAGATACAGAGGTGTGAGGCAGAGGATTTGGGGTAAGTGGGTTGCTGAAATTCGCGAACCAATCAGCAACCATGAGAGTAAGAAGAATGCAAAGAGGCTTTGGCTTGGTACTTTCACCACTGCATTTGAAGCTGCTCTTGCTTATGACAAAGCGGCTAAGACAATGTACGGTTCAGGCGCACGTTTGAACTTTCCGGAGCATGATTTGGAGTCAGTAGGCTCTGAAGAATCACCAAGTAAGAATGGAATTATATTTAGTGGTGAGGCCCCTAAAGCTGAGGATTTGGATGGTAATTTTCATCAGTTTTGTGAAGACAAACCTAATTTTTCTGATGTTGAAGCATTGGAGGGAACAAAGGAAGAAGATCATGATGTCCAAGAAAATGAGAAATGTGATGATGCAAGTGTTGTTCATAAGGAAATGAAGGATATTGAAGCTAAAATACCTGGAGAAAGTGAAGGAATCGAAGGAGAATCAGAAGAGGTTTTGAAGTGTTCTGGCTCTGGTGTTGAGTTTACTGATATGGCAATGAATTCTGGAGCTGATGGCACGGCTTCTGACGCCAACGAGCATGAGATTGTAGCGAATAATATAGAAGTACCAATCGAAGAATCGACCAAAAGTTTAACATCATCATGTGATTTGAGCAATATTGACAACCATTCTGATGATTACTTTAACAATCAGATATCAGATGAGGATTGCAACCCCAAACCTAATTATGATCAGTCAAACATAAAAAATGAGGCATATATGGTGAAGAAGAAACATGTGGAGGAAGTAATTTCTGAAATTCTAAGACTTTATAGCAACAAGTGCTCAAATAACTGTATTCAATCTCAAAATGAGAATGATGAAAATCAACCTTCTGTTAATGCTGAAGAAGAGAAGCCACTGATGCCAGTAGAAGCTGACATGGTACAAACTTGCAACTGCTACGGCTGCGATAATAGCGATGATGAAATTAAAAATGAGCCTAACGGTTCAGATGACAATGTTGGAGAAATGTATGAGTTTCAGGCTTTGAACAGCAACATTGATAGGAAGCTTGAATTGCAAGAAAAAGGAGATGATGGAAATGTGTTATCTGAATTCAGTTCCAAGCGTAATAGGAAGCTGTGTGAACATCTGAATAATATGCAGGTTGCTAGCATAGAAATGGATCATGATTATAGTTTTTTGAGACCTGACTATGATTTTGGGTTATTAGAAGAGCAGAAGTTACTTGATTTATGCTTTTCACATTTAGGATCTTAG 1476 0.3977 MATEIVSGNRNSSKRRRCGSDSLEDTLEKWKKKNSDIQHDFSTNGVHVVHKVPAKGSKKGCMKGKGGPQNSEFRYRGVRQRIWGKWVAEIREPISNHESKKNAKRLWLGTFTTAFEAALAYDKAAKTMYGSGARLNFPEHDLESVGSEESPSKNGIIFSGEAPKAEDLDGNFHQFCEDKPNFSDVEALEGTKEEDHDVQENEKCDDASVVHKEMKDIEAKIPGESEGIEGESEEVLKCSGSGVEFTDMAMNSGADGTASDANEHEIVANNIEVPIEESTKSLTSSCDLSNIDNHSDDYFNNQISDEDCNPKPNYDQSNIKNEAYMVKKKHVEEVISEILRLYSNKCSNNCIQSQNENDENQPSVNAEEEKPLMPVEADMVQTCNCYGCDNSDDEIKNEPNGSDDNVGEMYEFQALNSNIDRKLELQEKGDDGNVLSEFSSKRNRKLCEHLNNMQVASIEMDHDYSFLRPDYDFGLLEEQKLLDLCFSHLGS* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2439 491 MobiDBLite consensus disorder prediction 1 24 - -
Amo12g2439 491 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 327 - -
Amo12g2439 491 ProSiteProfiles AP2/ERF domain profile. 74 138 IPR001471 GO:0003700|GO:0006355
Amo12g2439 491 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 327 - -
Amo12g2439 491 Coils Coil 20 40 - -
Amo12g2439 491 SUPERFAMILY DNA-binding domain 74 138 IPR016177 GO:0003677
Amo12g2439 491 SMART rav1_2 74 144 IPR001471 GO:0003700|GO:0006355
Amo12g2439 491 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Amo12g2439 491 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Amo12g2439 491 MobiDBLite consensus disorder prediction 10 24 - -
Amo12g2439 491 Pfam AP2 domain 74 130 IPR001471 GO:0003700|GO:0006355
Amo12g2439 491 CDD AP2 74 140 IPR001471 GO:0003700|GO:0006355
Amo12g2439 491 Gene3D AP2/ERF domain 74 139 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2439 Amo-Chr12 107043481 107045819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2439 14 139 AP2-EREBP Transcription Factor Family AT2G40340 52.344 6.47e-38 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo12g2439 AP2 5.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2439 - - aip:107625804 960.674