Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2435 ATGCATTCATCAGAAACCGTACTCCATCTCCTTTTAACACACCCTCTCACTTTGCTCTTCCTTCACCCCTCTACATTGCTTTCTTTCTTCTTCTTCCATTGTAATACTAAACTAGCTACTACTCTGAACTTGACACAAAAAAGAAACCAACATAGATTGTTTCTTTTGTTCATGGAAACCAATAGTTGGCATGTCAATGGTTTCCACGTTAAGGGTAGTAGTAAAGATTCAATCTTTTTGGCCATTTTCATGTTCATTCATGTTTTGGCTTCTACCATTGAACCTGTTGCATGCCACCTGTATGATGGAGTGATTGTGACACAATCAGATTACCAGGCCTTAACGGCCATCAAGCATGAGTTCATTGACCTCAAAGGGGTTCTGAGGAGCTGGAATGACAGTGGTATTGGTGCTTGTTCTGGTGGTTGGGCAGGTATCAAGTGTGTCAATGGTGAAGTCATTGCAATTCAGCTTCCATGGAGGGGTTTAGGCGGAAGAATCTCAGAGAAAATTGGTCAGCTTCAAGCACTCCGGAAGCTGAGTCTCCATGACAATGTTCTTGCTGGTTCTGTCCCTTTTTCTTTAGGATTCCTTCCAAATCTTAGAGGTGTTTATCTCTTCAATAACAAGCTTTCAGGTTCTATTCCTCCTTCTATTGGTAGTTGTCCAATGCTTCAGTCTTTTGATGTTAGCAATAACTCACTCACTGGTAACATCCCTGCTAGTTTGGTAAATTCAAGTAGGATATTCAGGATCAATTTGAGCTTCAACTCACTTACTGGTTCCATTCCTAGGAGTTTCACCATGTCTCAATCCCTTACTATTCTTGCTCTCCAACACAACAATCTATCTGGTTCTATACCAGATTCTTGGGGTGGAATGGGAAAGGGAAAGAGAGTTCCCCAACTTCAAGTTTTGACCCTTGATCACAACCTCATTTCTGGTTCCATTCCTGTTTCTCTGAGTAACATGGTTTTGCTTGAAAATGTTTCTTTGAGTCATAACCATATTGGAGGCTCTATTCCAAGTGAGCTAAGTGCACTTTCAAGGCTTCAAAATCTTGATCTTTCACACAATGCCATCAATGGAAGCTTCCCTGCTAGCTTCTCCAACCTTTCTTCTCTTGTTTCATTGAATTTAGAGGGTAATAAACTTGAGAGTCATATCCCTGATAATTTGGACAGGTTGCACAATCTTTCAATGCTTAACCTCAAGAACAATAAGTTTAATGGCCAAATCCCACCAACAATAGGGAATATCTCTGGCATTAGACAAATTGATGTGTCTGGGAACAAATTCATTGGAGAAATTCCAGACTCACTCACCAAACTAGCAAATCTCACTTCATTCAATGTATCTTACAACAATCTCTCTGGTCATGTCCCTTCACTCCTCACCAAAAGATTCAACTCTAGCTCCTTTGTTGGGAATCTAGAACTATGTGGTTACCTATCAAAACCATGCACTTCACCTCCACCTTCAAATCTTCCAGTCCAAACACCAAACCCTTCTCCAAAGCCACATCATCACAGAAAGCTAAGTACCAAGGACATAATCCTCATTGTAGCAGGTATTCTCCTGTTGATTCTGTTACTCCTGTGCTGCTTTTTGCTATGTTGTTTGATCAGGAAAAGGGCTGCTTCAAGTAGAAAGGGTGCAAAGGCAACATCCAAGGCTTCAGCATCTGCAAGGAGTGTTGAAAAAGGTGGTGCTGGTGGTGAAGTTGAGTCAGGAGGAGAAGCTGGTGGAAAACTTGTTCACTTTGATGGTCCATTTGTGTTCACTGCTGATGATCTTTTGTGTGCAACTGCTGAGATAATGGGAAAGAGTGCATATGGAACTGCATACAAGGCCACATTGGAGGATGGTAACCAAGTTGCTGTGAAGAGGTTGAGGGAGAAGAGTACAAAAGGGCCCAAGGAGTTTGAGGCTGAGGTTGCTTCACTTGGCAAAATCAGACACCCAAATCTCTTAGCACTCAGAGCTTATTATTTGGGTCCAAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGCCAAAAGGAAGCTTAGCATCATTCCTTCATGCTCGTGGGCCGGAAATAGTGATTGATTGGCCGACAAGGATGAAGATAGCAATCGGAGTCACACGCGGCTTAAGCTACCTCCACAACCAAGAGAGCATAGTCCATGGCAATCTCACCTCAGGGAACATACTCTTAGATGAGCAAACCAATGCACACATAACAGATTTTGGACTGTCCAGGCTAATGACAACCTCGGCGAACACTAACATCATTGCAACAGCAGGAAGTCTAGGATACAATGCACCAGAGATCTCAAAAACAAAGAAACCAAACATGAAATCCGACGTATACAGCCTTGGAGTGATCATCTTGGAGCTCCTAACTGGGAAGCCACCTGGGGAACCAACCAATGGAATGGACTTGCCACAATGGGTGGCTTCTATAGTTAAAGAAGAGTGGACTAATGAAGTTTTTGACTTGGAGCTCATGACGGATGCACCAGCCATAGGTGATGAGCTTCTCAACACATTGAAGCTTGCCCTTCATTGTGTTGATCCTTCACCAGCTGCTAGGCCTGAAGCTCAGCAAGTTCTTCAGCAATTGGAAGAAATCAAGCCAGATTTGGCTGCTGGTGATGATGATGATGACGGAACTCTCAAGACTGCTGAATAA 2676 0.4279 MHSSETVLHLLLTHPLTLLFLHPSTLLSFFFFHCNTKLATTLNLTQKRNQHRLFLLFMETNSWHVNGFHVKGSSKDSIFLAIFMFIHVLASTIEPVACHLYDGVIVTQSDYQALTAIKHEFIDLKGVLRSWNDSGIGACSGGWAGIKCVNGEVIAIQLPWRGLGGRISEKIGQLQALRKLSLHDNVLAGSVPFSLGFLPNLRGVYLFNNKLSGSIPPSIGSCPMLQSFDVSNNSLTGNIPASLVNSSRIFRINLSFNSLTGSIPRSFTMSQSLTILALQHNNLSGSIPDSWGGMGKGKRVPQLQVLTLDHNLISGSIPVSLSNMVLLENVSLSHNHIGGSIPSELSALSRLQNLDLSHNAINGSFPASFSNLSSLVSLNLEGNKLESHIPDNLDRLHNLSMLNLKNNKFNGQIPPTIGNISGIRQIDVSGNKFIGEIPDSLTKLANLTSFNVSYNNLSGHVPSLLTKRFNSSSFVGNLELCGYLSKPCTSPPPSNLPVQTPNPSPKPHHHRKLSTKDIILIVAGILLLILLLLCCFLLCCLIRKRAASSRKGAKATSKASASARSVEKGGAGGEVESGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNQVAVKRLREKSTKGPKEFEAEVASLGKIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLASFLHARGPEIVIDWPTRMKIAIGVTRGLSYLHNQESIVHGNLTSGNILLDEQTNAHITDFGLSRLMTTSANTNIIATAGSLGYNAPEISKTKKPNMKSDVYSLGVIILELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMTDAPAIGDELLNTLKLALHCVDPSPAARPEAQQVLQQLEEIKPDLAAGDDDDDGTLKTAE* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2435 891 Gene3D Phosphorylase Kinase; domain 1 607 678 - -
Amo12g2435 891 CDD STKc_IRAK 607 872 - -
Amo12g2435 891 SUPERFAMILY L domain-like 144 490 - -
Amo12g2435 891 Pfam Leucine rich repeat N-terminal domain 108 148 IPR013210 -
Amo12g2435 891 Gene3D Ribonuclease Inhibitor 299 493 IPR032675 -
Amo12g2435 891 Pfam Protein tyrosine and serine/threonine kinase 605 869 IPR001245 GO:0004672|GO:0006468
Amo12g2435 891 SUPERFAMILY Protein kinase-like (PK-like) 605 874 IPR011009 -
Amo12g2435 891 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 52 878 - -
Amo12g2435 891 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 52 878 - -
Amo12g2435 891 Gene3D Transferase(Phosphotransferase) domain 1 679 886 - -
Amo12g2435 891 SMART LRR_typ_2 300 324 IPR003591 -
Amo12g2435 891 SMART LRR_typ_2 372 396 IPR003591 -
Amo12g2435 891 SMART LRR_typ_2 174 197 IPR003591 -
Amo12g2435 891 SMART LRR_typ_2 348 371 IPR003591 -
Amo12g2435 891 SMART LRR_typ_2 198 222 IPR003591 -
Amo12g2435 891 SMART LRR_typ_2 444 467 IPR003591 -
Amo12g2435 891 Gene3D Ribonuclease Inhibitor 105 298 IPR032675 -
Amo12g2435 891 MobiDBLite consensus disorder prediction 870 891 - -
Amo12g2435 891 Pfam Leucine rich repeat 349 409 IPR001611 GO:0005515
Amo12g2435 891 MobiDBLite consensus disorder prediction 553 578 - -
Amo12g2435 891 ProSiteProfiles Protein kinase domain profile. 601 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2435 Amo-Chr12 106984874 106988013 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2435 99 874 Receptor kinase-like Gene Family AT3G51740 68.462 0.0 1023
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo12g2435 PK_Tyr_Ser-Thr 1.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2435 - - aip:107625805 1338.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2435 12 106984874 106988013 Amo12g2435 12 106984874 106988013 ECH