Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2427 ATGAAATCAAGCACACCATTGAAAGCCTTGAGTGGTAATAGTAGTAGTAGTGTTCATCATCATGACAATGATATTATTCCATTTCTTCATCATGAGTATGGTGGTAACATGATGAATAAGGTTACTACTAGTTATAGTTTTAATAACCCTTCTATGTGTCGATTAGGGTTTCCTTTAACAGCCATAGATAGGTTCCTATGTAGCCAACAACAAAGCCAAGTCCTTCATAGGAAACACCAACAACACAATGATGATGATGTTGCAAAGAATAATAATGTTAGTGTTTTTGATGAAGATTTCCACACTAGGTTTTCTAATTGTTATTATGGTGGTGCTTCAAATAACCCTTATTATAAGTTTGAGTGGCCTAATTGCACTWCTCAAGAAGCAAGCCTTGTTGTTGATGATGATCATGATCATCACCTCTTAGCAATTAGTAGTGKTGATCAAGAAGAGGGTTTCAATTGGCTACAAAAATTCCTCACATTGTGTCACAATAAAGAAGATGTTCAAGCTTTAGGGGAAAATCTCAAAATTAGGGGAAGGAACCCTAAGAAAATTTCTTCTATATCCTTGATCAAAGGACAATGGACTCCTGAGGAAGACAGGAAATTGGAGAAGCTAGTGAAGCAACATGGTATAAGGAAGTGGTCACAAATAGCTGAGAAATTGGAGGGAAGGGTTGGGAAGCAGTGTAGAGAGAGGTGGCATAATCATCTCCGCCCTGATATCAAGAAAGATGGTTGGAGTGAAGAAGAAGAGAGGATTTTGGTAGAAACTCACATGAAGGTCGGAAACCGTTGGGCTGAAATCGCGAAGCGAATACCCGGACGAACCGAAAACTCGATCAAAAACCATTGGAACGCAACAAAAAGAAGACAGAACTCAAGGAGAAAGAACAAGAAGCCATCATCATCATCAACCACCTCAAACAATAATGGCAAACCCCAATCTTCAATTCTTGAAGACTACATTAGAAGCAAAACCCTAATTGGTACCAATAATATCACTGCTCCTATTACTACTACCACTACTAATTCAACACCAACTATTACTAGTGAATCTGAATCTATCACTAATAATAGTGATAATAATAATAATAATCCATATTATTCATCACCAACAATCATAGCTGAATCATCYTATGATGATGAGTTACTCTTCATGCAACAACTTTTCAAAGAGAATAATCAAATTGTCAATGGAGATGCTGTTATTAAGAACACTAACGATGAATGTGGTGATGGGTTTGTTCATTATTCCAATTATTATTATCCTCCAAATCCAGGGAACATGCACAACTCCATCATCAATTGA 1317 0.3683 MKSSTPLKALSGNSSSSVHHHDNDIIPFLHHEYGGNMMNKVTTSYSFNNPSMCRLGFPLTAIDRFLCSQQQSQVLHRKHQQHNDDDVAKNNNVSVFDEDFHTRFSNCYYGGASNNPYYKFEWPNCTXQEASLVVDDDHDHHLLAISSXDQEEGFNWLQKFLTLCHNKEDVQALGENLKIRGRNPKKISSISLIKGQWTPEEDRKLEKLVKQHGIRKWSQIAEKLEGRVGKQCRERWHNHLRPDIKKDGWSEEEERILVETHMKVGNRWAEIAKRIPGRTENSIKNHWNATKRRQNSRRKNKKPSSSSTTSNNNGKPQSSILEDYIRSKTLIGTNNITAPITTTTTNSTPTITSESESITNNSDNNNNNPYYSSPTIIAESSYDDELLFMQQLFKENNQIVNGDAVIKNTNDECGDGFVHYSNYYYPPNPGNMHNSIIN* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2427 438 Gene3D - 193 245 - -
Amo12g2427 438 ProSiteProfiles Myb-like domain profile. 189 240 IPR001005 -
Amo12g2427 438 MobiDBLite consensus disorder prediction 341 372 - -
Amo12g2427 438 CDD SANT 249 291 IPR001005 -
Amo12g2427 438 Gene3D - 248 319 - -
Amo12g2427 438 MobiDBLite consensus disorder prediction 301 324 - -
Amo12g2427 438 PANTHER MYB PROTEIN-RELATED 145 395 - -
Amo12g2427 438 ProSiteProfiles Myb-like domain profile. 241 291 IPR001005 -
Amo12g2427 438 SMART sant 193 242 IPR001005 -
Amo12g2427 438 SMART sant 245 293 IPR001005 -
Amo12g2427 438 SUPERFAMILY Homeodomain-like 191 287 IPR009057 -
Amo12g2427 438 MobiDBLite consensus disorder prediction 277 324 - -
Amo12g2427 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 245 295 IPR017930 -
Amo12g2427 438 PANTHER TRANSCRIPTION FACTOR MYB119-RELATED 145 395 - -
Amo12g2427 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 244 IPR017930 -
Amo12g2427 438 CDD SANT 197 240 IPR001005 -
Amo12g2427 438 Pfam Myb-like DNA-binding domain 197 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2427 Amo-Chr12 106802855 106805611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2427 185 436 MYB Transcription Factor Family AT5G58850 51.351 1.27e-71 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo12g2427 Myb_DNA-bind_6 1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2427 K09422 - gmx:100786295 295.434