Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2420 ATGAAAATCTCAAATCAAAATGGCAAAATCCTAGCCCTAGGTTCTTTGCCGCCGGCGTCCCAGGCTCGGCGCTTCCGCTTCTTCCTCTTCCCTCTGTCCAGAACCCAGGTAGCTCGGCACGTCGTCCCCATCCTCGCTGGCTTCTCTGTCTGTGGCCAGGAAAAAAGAAGGAATCGAAGTCCAATCGCAATACCAAATCCTAGTCACTTAGAAGCAGTGGATCCTGTGGTAGAAGGAAAAACTAGAGCTAAACAATATGTTTCAAATGATTCTGAAAGAATCAAGAACATTAGTATTTTGATTCATGGAGATGGTAGTTTACCAGGACAAGGTGTAGCATATGAAAGTTTGCGTCTAAGTGCTCATCCAAATTATTCTACTCGTGGAACTGTTCATCTAGTCCTCAACAATCAAGGGAATGATATGTGTGGTGACTTTTGTGTGCTGGATATGGGGCTTCAAAAGCTGTCTAAACGAGAAGTTGGAACCATAGATAGAAGTCGGGATGTTGCTCAATTACAAGAGTTCTATAAGCTTTATAGAGAGAAGAATAATGTAGAGAAATTGCACGAGGAAGAGATGAAGTTGAGGGAATCTGGTGCTTTCAGCCGGGATCTTGGTGAGTATAATAAGGGAAATGCCATCCTCTAA 651 0.4347 MKISNQNGKILALGSLPPASQARRFRFFLFPLSRTQVARHVVPILAGFSVCGQEKRRNRSPIAIPNPSHLEAVDPVVEGKTRAKQYVSNDSERIKNISILIHGDGSLPGQGVAYESLRLSAHPNYSTRGTVHLVLNNQGNDMCGDFCVLDMGLQKLSKREVGTIDRSRDVAQLQEFYKLYREKNNVEKLHEEEMKLRESGAFSRDLGEYNKGNAIL* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2420 216 Gene3D - 35 140 - -
Amo12g2420 216 Pfam Dehydrogenase E1 component 58 138 IPR001017 GO:0016624
Amo12g2420 216 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 28 139 IPR029061 -
Amo12g2420 216 PANTHER 2-OXOGLUTARATE DEHYDROGENASE 64 138 IPR011603 GO:0004591|GO:0006099|GO:0030976
Amo12g2420 216 PANTHER 2-OXOGLUTARATE DEHYDROGENASE, MITOCHONDRIAL-LIKE 64 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2420 Amo-Chr12 106654267 106656147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2420 154 206 Cell Wall Biosynthesis AT3G07160 73.585 1.19e-19 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2420 K00164 - aof:109843241 121.709