Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2416 ATGGGAAATGCTTGTACGTGTCAAGTTTCTATTGGACGAAAAGTGTATGATGCTGATGACTCTGATTCAAATAATTCAAATGATTATTTACCATATAGATATGGACATTGTGGAGCCAAGGTTATGTTAAGTGGATCCTCTAAATTTGTATCAATGTATTCCCAAAAGGGTCAAAAAGAAGTGAATCAAGATGCAATGACAGTTTGGGAGAACTTCACTGGAGAAAAAGACATGATATTTTGTGGTGTGTTCGATGGTCATGGTCCTCAAGGGCACAAATATGCACAAACCATATGCAATAATCTTCCTTCAAAACTCTCCACATCAATCAAAATGTCACAGCAAATTAGTAAGAGCCAACTTGGATTGGATATCAATGGTGATGAAAACCAAAACATGCCTTGTGTTTCATGGGAGGGAAGCTTTTTGAAGTCTTTTAGTGAAATGGATAGAGATCTTGCTCAGAACGTTTACATTGGTAGCTTTAGTGGCGGTAGCACTGCTGTCACTATAGTTAAGCAGGAAAATCAGTTGATAATTGGTAATTTAGGAGATTCTCGTGCAATTCTTTGCACAAAAACAGATGACAATTTTCGAATTCCTATTCAACTTACCGTTGACCTAAAACCAAATATTCCAAGTGAAGCTTCAAGAATAACTAAGTGTGGAGGCAGAATCTTTCCATCAAAAGATGATCCAAGTGGTATAAATAGAATATGGATGGCTGAAGAAGATTGTCCTGGCTTGGCTATGACAAGATCATTTGGAGATTTCTGCCTAAAAGATTATGGTCTCATCTCAGTTCCTGATGTAATCTATAGAAGAATTAACAAACAAGATGAATTTGTGATATGGGATGTGCTAACAAATGAAGAAGTAATTAACATAATTAGTTCAGCAAGGAAGAGGTCAGAAGCAGCAAAAACATTAGTAAAGCATGCCCTTCAAGCCTGGAAAGTCAAGTGTCCTAATGCTGCAGTTGATGATTGTACAGCTATATGTTTGTTCTTGAATAATTAA 1020 0.3647 MGNACTCQVSIGRKVYDADDSDSNNSNDYLPYRYGHCGAKVMLSGSSKFVSMYSQKGQKEVNQDAMTVWENFTGEKDMIFCGVFDGHGPQGHKYAQTICNNLPSKLSTSIKMSQQISKSQLGLDINGDENQNMPCVSWEGSFLKSFSEMDRDLAQNVYIGSFSGGSTAVTIVKQENQLIIGNLGDSRAILCTKTDDNFRIPIQLTVDLKPNIPSEASRITKCGGRIFPSKDDPSGINRIWMAEEDCPGLAMTRSFGDFCLKDYGLISVPDVIYRRINKQDEFVIWDVLTNEEVINIISSARKRSEAAKTLVKHALQAWKVKCPNAAVDDCTAICLFLNN* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2416 339 Gene3D - 43 339 IPR036457 -
Amo12g2416 339 PANTHER ALPHABET, ISOFORM E-RELATED 1 339 - -
Amo12g2416 339 SUPERFAMILY PP2C-like 45 339 IPR036457 -
Amo12g2416 339 PANTHER PROTEIN PHOSPHATASE 2C 65-RELATED 1 339 - -
Amo12g2416 339 ProSiteProfiles PPM-type phosphatase domain profile. 49 337 IPR001932 -
Amo12g2416 339 CDD PP2Cc 49 337 IPR001932 -
Amo12g2416 339 SMART PP2C_4 43 335 IPR001932 -
Amo12g2416 339 Pfam Protein phosphatase 2C 57 316 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2416 Amo-Chr12 106621054 106624676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2416 38 339 PP2C-type Phosphatase Gene Family AT5G01700 47.727 7.25e-104 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2416 - - cam:101501265 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2416 12 106621054 106624676 Amo12g2416 12 106621054 106624676 ECH
Amo12g2416 12 106621054 106624676 Amo02g2632 02 82608499 82611714 hybridization