Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2409 ATGGTCAATATTCAAGAAAATGAATCTTCAACTTCTCAGAAGCAACTTCCTAACACATGCATGCATGCTCTTACTTCAATTCACATATATATATGCTCACAAAATATGCATCACTTTCTCAAAAAAGAAAGGAACATGTCTTTCACTACTTTCAGTGGCTTACTTTCAAGAAGGTACAACAACATCAGCATGGTTGATAATTGTTGGGAAACTTCTATACCTAGAACTGGTAGTGATGATAATCATGGTGAATTTTTTTCATCAATAATTTACCCTTCTTACTCTGATTTCCCACCTGGTTTCAATCCCAATGAGTTCTTGGATGCATTTCTTTCTGAATCAAATAGTTTAAACTGGAGAAACAGTTCAAGTGAGAATCAACAAAGTAAGGAAGAGGATGAAAAGTACTACTCTGACCCCTCTATTGATGTGTCTCTCTTACAATCCTCCTCAAACATTTTTGAAGAGGGAGACCCACAAAGAAAGCAGGACACATTTACAATCCTTGAATCTGGCATGCTTGTTGATTTTTCATCGCCGATGACGAATACAACAAATTTTCAAGATCCGTATCTCCGCAACTTCTCTGAAATGGCCTTAGCCGTTCCCGAAATACATAGCACTTTAGCTCCTCAACTAAATTGTCATAAATCTATTAATGAAGATGAGGACGGAGATGGATACAATTGGAGGAAATATGGAGAGAAACGGACGAAAGGAGGCGAAAATCCCCGGAGTTATTATAGGTGCGCAGAACCAAATTGCACGATGAAGAAGAAAGTTGGGAGAAACTTGGATGGAAAAATCATTGCCATTATGTACAAGGGAAATCACAACCATCCCAAGCCTTCTAAACCTGTTGGAAGTGCAAATTTTCCATTAGTTAATGAACTTTATGCATCATCATACACTGACTCGGTGAATTTGAATCGACAATCTGTTGGAGGAGGTGTTGAAAATCAACTTGGAGCACACACCAAAAGATTGAAAGGAGGGAATGGAATCTATAGCTATTTGTTTCCGAGTGGGGGCAAAGCTATAAAGGAACCCAGAGTTGTAGTTCAAACTACAACTGAAATTGACATTCTTGACGATGGCTATAAGTGGAGGAAATATGGCCAGAAAGTTGTTAAGGGAAACCCAAACCCAAGGAACTACTATAAGTGTGTGAGTCCAGGTTGTAACGTGAAGAAACATGTGGAGAGAGCTGCAGATGACATAAAGTCTGTGATGACAACCTATGAAGGCAAACACAACCATGATGTTCCTCAAGAAAGATCATCCTTTGCATCTCGCATAGCATCACTCACCAACAACTTTGCAACCCCATCATCATCATCATCACTTCCTCTTCATGACACAAGCCTATCACTATCTTCACCAAGGGCCAACAATGAAAATCAAGCAAGTCAAGAACTTACTACTCTTCCCTTCATTGTTGGAATTCCAAATTTCGGTAGGTCATTGATTGGTACTTCATATGCCAATGAGGGACCAAGCTCAAACAATGAAGAGAAGAAGGATTAG 1527 0.3923 MVNIQENESSTSQKQLPNTCMHALTSIHIYICSQNMHHFLKKERNMSFTTFSGLLSRRYNNISMVDNCWETSIPRTGSDDNHGEFFSSIIYPSYSDFPPGFNPNEFLDAFLSESNSLNWRNSSSENQQSKEEDEKYYSDPSIDVSLLQSSSNIFEEGDPQRKQDTFTILESGMLVDFSSPMTNTTNFQDPYLRNFSEMALAVPEIHSTLAPQLNCHKSINEDEDGDGYNWRKYGEKRTKGGENPRSYYRCAEPNCTMKKKVGRNLDGKIIAIMYKGNHNHPKPSKPVGSANFPLVNELYASSYTDSVNLNRQSVGGGVENQLGAHTKRLKGGNGIYSYLFPSGGKAIKEPRVVVQTTTEIDILDDGYKWRKYGQKVVKGNPNPRNYYKCVSPGCNVKKHVERAADDIKSVMTTYEGKHNHDVPQERSSFASRIASLTNNFATPSSSSSLPLHDTSLSLSSPRANNENQASQELTTLPFIVGIPNFGRSLIGTSYANEGPSSNNEEKKD* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2409 508 SUPERFAMILY WRKY DNA-binding domain 355 423 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo12g2409 508 SUPERFAMILY WRKY DNA-binding domain 222 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo12g2409 508 MobiDBLite consensus disorder prediction 119 138 - -
Amo12g2409 508 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 87 452 - -
Amo12g2409 508 Gene3D WRKY domain 211 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo12g2409 508 Gene3D WRKY domain 348 424 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo12g2409 508 ProSiteProfiles WRKY domain profile. 219 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g2409 508 ProSiteProfiles WRKY domain profile. 358 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g2409 508 MobiDBLite consensus disorder prediction 441 469 - -
Amo12g2409 508 Pfam WRKY DNA -binding domain 364 420 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g2409 508 Pfam WRKY DNA -binding domain 226 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g2409 508 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 87 452 IPR044810 GO:0003700
Amo12g2409 508 SMART WRKY_cls 363 422 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo12g2409 508 SMART WRKY_cls 224 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2409 Amo-Chr12 106554857 106560991 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2409 226 457 WRKY Transcription Factor Family AT2G38470 45.620 1.20e-69 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo12g2409 WRKY 3e-23 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2409 12 106554857 106560991 Amo02g2644 02 82792368 82798222 hybridization