Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2356 ATGGAAGAAAGCCATGGATCCCAATGTTCCAAGACAAGCCCTTCAAACCTTGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGACGACGACGAATGCGAAAACAAGAAGAATAATGGAGGAGGAGGAGGAGGGTGTTCAAGCAATAGCACAGTGGAAGAGAATAGTAATAATAATAATGATAAGAAGAAAATAAGGCCTTATGTTAGATCCAAGTTTCCAAGGCTTCGTTGGACACCTGATCTTCACCTTAGATTTCTTCATGCTGTTCAAAGACTTGGAGGTCAAGAGAGAGCAACCCCAAAACTGGTTCTTCAATTGATGAACATCAAAGGATTAAGTATTGCCCATGTCAAGAGTCATTTACAGATGTTTAGAAGCAAAAAATTGGATGAACCAAATCATCAAGTGTTGGCCAATCATCATAGTAGTCGTCTTATGGATACTGGAGACAGAAATATATATAATCTTAGCCAACTTCCAATGCTTCAAGGGTATAACCCAAGCACAATTTCATCCCACAGATTTGGATATGGGGATAATTCATTCACAAGTGCCTATGAAAAAATGGTGCATAGACCTTTCAATTGGGCTAATAGCATCTTCCGGGTTGGTTCTTCTTCCAATTTTATTGAGCAGCAACAACAACAACAACCAATAATAACAAGTAATAGTAGTTTTAAAATCCATGAACGAAGAAAAGATGATCATGAATTCCTCTCATTTGGTAGTAGTAGTGCACATGATCACTCCCTATGCACTAAAAGATTGAGCAATAATAATAATGTTGGTCTCACCCCATTATTATTATCATCACAAAATCCAAGAACACAAGACAATAATAACAATCATAACATCATCATGCCATTGAAAAGGAAGGCATCACCATCATCATCATCATCATTAGCTACTGAAAAAATTGATTTGGATCTTTCATTAAAATTGAACTCAAGGATAGATGGTGATGATGAAGAAAGAAGAGTGGAATTGGAGGATCATGATGATAATAACAAGAATAATGATGATGATAACAATCTATCATTATCTTTGTACCCTCCTATTCAATCATCAACCTCTAATAATCTTAGAAGCAATAAGTTGAAGGAAGCACAAGATTGTTGCAAGAAGCAAGGGAAAATGGCTAGTACCCTGGATCTGACTATATGA 1164 0.3651 MEESHGSQCSKTSPSNLEEEEEEEEEEDDDECENKKNNGGGGGGCSSNSTVEENSNNNNDKKKIRPYVRSKFPRLRWTPDLHLRFLHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMFRSKKLDEPNHQVLANHHSSRLMDTGDRNIYNLSQLPMLQGYNPSTISSHRFGYGDNSFTSAYEKMVHRPFNWANSIFRVGSSSNFIEQQQQQQPIITSNSSFKIHERRKDDHEFLSFGSSSAHDHSLCTKRLSNNNNVGLTPLLLSSQNPRTQDNNNNHNIIMPLKRKASPSSSSSLATEKIDLDLSLKLNSRIDGDDEERRVELEDHDDNNKNNDDDNNLSLSLYPPIQSSTSNNLRSNKLKEAQDCCKKQGKMASTLDLTI* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2356 387 MobiDBLite consensus disorder prediction 323 340 - -
Amo12g2356 387 PANTHER - 3 387 - -
Amo12g2356 387 MobiDBLite consensus disorder prediction 17 32 - -
Amo12g2356 387 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 387 IPR044848 GO:0003700
Amo12g2356 387 MobiDBLite consensus disorder prediction 1 65 - -
Amo12g2356 387 Gene3D - 73 129 - -
Amo12g2356 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 129 IPR017930 -
Amo12g2356 387 MobiDBLite consensus disorder prediction 40 55 - -
Amo12g2356 387 MobiDBLite consensus disorder prediction 341 363 - -
Amo12g2356 387 SUPERFAMILY Homeodomain-like 73 127 IPR009057 -
Amo12g2356 387 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 73 128 IPR006447 GO:0003677
Amo12g2356 387 Coils Coil 18 38 - -
Amo12g2356 387 MobiDBLite consensus disorder prediction 323 363 - -
Amo12g2356 387 Pfam Myb-like DNA-binding domain 75 123 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2356 Amo-Chr12 105560887 105563764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2356 64 202 G2-like Transcription Factor Family AT2G42660 50.000 1.17e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo12g2356 Myb_DNA-binding 7.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2356 - - aip:107628479 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2356 12 105560887 105563764 Amo12g2356 12 105560887 105563764 ECH