Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2345 ATGGATTGCATTGATCCAAGTGGTAACACCATCACATGTGCATCAATAGAAGAACAAGGCTCATCTTCAAACCCAAACAACAAGAGGAAGAAAGGTAATGCTATGAACAACAATAAGAYGAAGAACAAGGGAGTGATGAAACTCTCAACTGACCCACAAAGTGTGGCAGCAAGAGAAAGAAGGCACAGAATCAGTGACAGGTTCAAGATCCTTCAGAGCATGGTCCCTGGTGGCAGCAAGATGGACACTGTTTCTATGTTGGAAGAAGCCATTCACTATGTTAAGTTCCTCAAGGCTCAGATTTGGCTTCACCAAACTTTGATGATGAACTATGATCATTTTTAA 345 0.4145 MDCIDPSGNTITCASIEEQGSSSNPNNKRKKGNAMNNNKXKNKGVMKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLKAQIWLHQTLMMNYDHF* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2345 114 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 28 110 - -
Amo12g2345 114 MobiDBLite consensus disorder prediction 1 52 - -
Amo12g2345 114 CDD bHLH_AtIND_like 49 109 - -
Amo12g2345 114 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 28 110 IPR045843 GO:0003700|GO:0006355
Amo12g2345 114 Pfam Helix-loop-helix DNA-binding domain 58 97 IPR011598 GO:0046983
Amo12g2345 114 Gene3D - 52 106 IPR036638 GO:0046983
Amo12g2345 114 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 108 IPR036638 GO:0046983
Amo12g2345 114 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Amo12g2345 114 MobiDBLite consensus disorder prediction 8 49 - -
Amo12g2345 114 SMART finulus 54 103 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2345 Amo-Chr12 105421436 105423275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2345 39 113 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 56.000 9.20e-23 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo12g2345 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2345 - - adu:107475363 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2345 12 105421436 105423275 Amo12g2345 12 105421436 105423275 ECH