Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2331 ATGCAATATTTGCGGAGTTTGAATTTGGCTTATAATGAATTCCACTTTGAAATTTATTCTGAGTTCAAAAACCTGAAGAATCTCAGGTATCTGAATTTGTCAAATGCTGGTTTCATGGGGCAAATTCCACCTGAAATCTCTTACTTGATCAAGTTGGAGACTCTTGATTTGTCTACCACAATCACTTCATCATCAAAACATGGTTTGAAACTTGAGAAGCCAAACATGGTAGAGTTTGTGCAAAACTTTACAAGAATGAAAGAACTGTATCTAGATGGTGTTGCAATTTCAGCCAAAGGAGAGGACTGGTGCCATGCTGTATCTTCCCTGCAAAGTCTACAAGTTTTGAGTATGTCATCTTGCAATCTCTCTGGTCCTCTTGATTCTTCATTGACAAAGCTTCAATCTCTCTCAATACTTCAACTAGACCATAACAATTTGGCAAGCCCAATTCCTGAGTACCTTGGTAATTTGTCTAATTTAACCACTTTGCAACTCAGAAGTTGTGGTTTGAGTGGAGTCTTTCCAAAAAATATCTTCCAAATTTCATCACTTCATGTCCTTGATGTGTCAGATAATCAAGGCCTTCATGGTTCTTTATCAAACTTTCTACATCAAAGATCTCTCCATTACTTGAATCTTAGCCGCACAAATTTCTCAGGACCTTTACCACAGTCTATTAACAAGTTAAGACAATTGTCAACACTAGATCTATCAAATTGCCAATTCAATGGGACAATTTCCAATTCATTGTCCGATCTTGCCGAACTTGTTTATCTTGATTTGTCATTCAATAATCTTACTGGTCCTCTTCCATCTTTCAATAGGTCCAAGGCTCTGAGAATCTTGTATCTTACTCATAATTATCTAAAGGGCACACTTTCACCCACCCATTTTGAAGGCCTTATAGATCTTGTGAGCATTAATTTAGAAGTTAACTCTCTAGATGGAAGACTTCCTTCATCTTTGTTTACACTTCCATCTCTGCAGCTGCTCTTTCTTGCTGACAATAGATTTGATGGCCAACTTGAAGAGTTCCCAAATGGTTCCTCCTCATCATTAGAGATGCTTGATTTAAGTGAAAACAATTTTGAAGGGCGTGTTCCTTTGTCTATCTTTCAACTGAAAAGTCTCAGTTTACTTCAACTTTCCACAAACAAGTTCAATGGCACCATACAATTGAGTGTTGTTCAAAGGCTACAAAATTTGGCAACACTTGGTCTCTCAAACAACAACTTGTTAATTGTGGATGACAATGATCTTCCATTCCCCAAGTTGATCAATCTTTGGTTGGCTTCATGTAAGTTGACGGTATTTCCTGCATTTTTGAGAAATCAGTCTTCTTTACTCTTTTTAGATTTGTCCAACAACCAAATTGAAGGAACAATACCCAATTGGATTTGGAGACTTGAAATTCTATGCTTCTTGAATCTTTCCAACAATTTTTTGACTGATATGGAAGGTCCTTTCCAAAATCTTAGTTCAATTTTGTTCTACCTTGATCTTCATGGAAATCAATTACAAGGACCAGCACCCATTTTCACAAAAAATATTGTTCATCTGGACTACTCAAATAATAGATTCAGTTCTATTACACCATCAGATATTGGTAATTCTATTCCTGACTCAGTTGATATATTTTTCTCAAACAACAATTTTTATGTAAAAATCGATGAATCCATTTGCAATATTTCAACTCTTAGAATGCTTGATCTTTCATATAATGGCTTCATTGGCAACATTCCTGAGTGCTTGACAACAAGGAAGAGTAGCTCTCTGAAACTATTAAATCTTGCTGGAAACAAACTCAATGGCCACATTTCAGATACATTATTCTCAACTTCATGTTCTCTAAGGTTTATAGATCTCAATGGAAATCTTTTAAATGGAGGCCTCCCAAAATCTTTGGCTAACTGCCAAAATCTCCAACTCCTAAATGTTGGAAACAATCAATTAATGGACGAGTTCCCCTGCTTCTTGAAGAACATTTCTTCGCTAAGTGTCATGGTTTTAAGGTCAAATAAGTTCTATGGACAGATTGGATGCCCCAATGTGATTGGCGATTGGGAAAAGCTTCAAATTGTTGATGTAGCAGACAACAAATTTAGTGGCATGTTGTGGTACTCCAAGAAAGTAGAGGAAGCTCTATACAAGATTGTGCCTCAACTTGATTTTAGAGAAGAGGAAGGTTTTTATAGGTTTTAA 2205 0.3628 MQYLRSLNLAYNEFHFEIYSEFKNLKNLRYLNLSNAGFMGQIPPEISYLIKLETLDLSTTITSSSKHGLKLEKPNMVEFVQNFTRMKELYLDGVAISAKGEDWCHAVSSLQSLQVLSMSSCNLSGPLDSSLTKLQSLSILQLDHNNLASPIPEYLGNLSNLTTLQLRSCGLSGVFPKNIFQISSLHVLDVSDNQGLHGSLSNFLHQRSLHYLNLSRTNFSGPLPQSINKLRQLSTLDLSNCQFNGTISNSLSDLAELVYLDLSFNNLTGPLPSFNRSKALRILYLTHNYLKGTLSPTHFEGLIDLVSINLEVNSLDGRLPSSLFTLPSLQLLFLADNRFDGQLEEFPNGSSSSLEMLDLSENNFEGRVPLSIFQLKSLSLLQLSTNKFNGTIQLSVVQRLQNLATLGLSNNNLLIVDDNDLPFPKLINLWLASCKLTVFPAFLRNQSSLLFLDLSNNQIEGTIPNWIWRLEILCFLNLSNNFLTDMEGPFQNLSSILFYLDLHGNQLQGPAPIFTKNIVHLDYSNNRFSSITPSDIGNSIPDSVDIFFSNNNFYVKIDESICNISTLRMLDLSYNGFIGNIPECLTTRKSSSLKLLNLAGNKLNGHISDTLFSTSCSLRFIDLNGNLLNGGLPKSLANCQNLQLLNVGNNQLMDEFPCFLKNISSLSVMVLRSNKFYGQIGCPNVIGDWEKLQIVDVADNKFSGMLWYSKKVEEALYKIVPQLDFREEEGFYRF* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2331 734 Pfam Leucine rich repeat 279 339 IPR001611 GO:0005515
Amo12g2331 734 SMART LRR_typ_2 326 353 IPR003591 -
Amo12g2331 734 SMART LRR_typ_2 254 277 IPR003591 -
Amo12g2331 734 SMART LRR_typ_2 470 492 IPR003591 -
Amo12g2331 734 SMART LRR_typ_2 25 49 IPR003591 -
Amo12g2331 734 SMART LRR_typ_2 400 423 IPR003591 -
Amo12g2331 734 SMART LRR_typ_2 134 158 IPR003591 -
Amo12g2331 734 SUPERFAMILY L domain-like 440 704 - -
Amo12g2331 734 Gene3D Ribonuclease Inhibitor 278 348 IPR032675 -
Amo12g2331 734 Gene3D Ribonuclease Inhibitor 349 418 IPR032675 -
Amo12g2331 734 Gene3D Ribonuclease Inhibitor 419 516 IPR032675 -
Amo12g2331 734 PANTHER LEUCINE-RICH REPEAT-CONTAINING, PLANT-TYPE, LEUCINE-RICH REPEAT DOMAIN, L-RELATED 4 706 - -
Amo12g2331 734 Gene3D Ribonuclease Inhibitor 65 277 IPR032675 -
Amo12g2331 734 Gene3D Ribonuclease Inhibitor 1 64 IPR032675 -
Amo12g2331 734 Gene3D Ribonuclease Inhibitor 517 718 IPR032675 -
Amo12g2331 734 SUPERFAMILY L domain-like 176 507 - -
Amo12g2331 734 SUPERFAMILY L domain-like 2 244 - -
Amo12g2331 734 Pfam Leucine Rich Repeat 233 253 IPR001611 GO:0005515
Amo12g2331 734 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 4 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2331 Amo-Chr12 104994140 104998020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2331 110 706 Receptor kinase-like Gene Family AT3G11080 34.395 2.26e-78 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2331 - - aip:107627695 1297.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2331 12 104994140 104998020 Amo12g2331 12 104994140 104998020 ECH
Amo14g3027 14 128010879 128014622 Amo12g2331 12 104994140 104998020 PCT
Amo04g2019 04 89580902 89583849 Amo12g2331 12 104994140 104998020 PCT
Amo12g2331 12 104994140 104998020 Amo14g3027 14 128010879 128014622 PCT
Amo12g2331 12 104994140 104998020 Amo04g2019 04 89580902 89583849 PCT