LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo12g2327	ATGTGCATGCATGTGTTATGTTGCATTTATCTTCCTGCTAAACTTTGTATTTCTCGATCCGTTAAACGGACTGGCCATGAAGGAAACCTTCAGGGTGGAAAAGCTGCAGCAGTTGTGAATAGAATGCTTCAAAAGAAAGAGCTGCCCAAATTAAGCGAAGGCTATAGCCGGATAACATTTTGTCAGAGTGARAGTGATGTCAAAGGTGCCATTARTACATACGGCTCACTTGGGCCACTGGATAACCTCCCACRTGGCTGCTTTGGCCAGAAAAATCCAGATTCAAAAGTTCAAGTTGGTATAATGAAGTTCCTMAAAAAGGTGCCAGCCCCTGATGCAGCAGCAAGACCTGATGGAAGTGGAGACACTACGTCCCAAAATCCTGGRAAAAATGATTATTTCCACAAAGATGTAGAAATGGCATCCCCAATTCTAGATAATCCCAACTTAGAGTCAAAGGAAGGAGAAAGCCAGGRAGTGGCCTTCGATGGTTCCCATGCCAGTCGAKTTTCTCTGGATGATGCTCCCACTCTGGCATTTCCATCTATTTCAACATCTGATTTCCAATTCAATTATGAAAAGGCAGCTGATATTATTGTTGAGAAGGTTGCRGAGTTTACAGCTAAGCTTGGCAATGCTAGACTTGTGCTGGTTGATTTGACTCATAAATCAAAGATTCTTTCCTTRGTTAAAGCCAAAGCATCTGAAAAACACATTGAYACCCAAAAGTTTCTTACCCAYGTCGGTGACATTACTAAACTTCATTCTACAGGAGGTTTAAACTGTAATGTCATAGYTAATGCTGCCAACTGGCGGTTAAAACCTGGWGGTGGAGGTGTTAATGCAGCCATTTTTAAYGCTGCGGGTCCTGAACTGGAGTCTGCAACCAAAGAAAGAGCAAAATCTCTTTCACCTGGAAATGCTGTTGTTGTCCCTCTACCTGCATCTTCTCCTTTGTTTGTTACAGAGGGTGTAACCCATGTCATACATGTTCTTGGACCTAATATGAACCCTCAAAGRCCAAATTGTCTYAACAATGATTATGAAAAAGGATGCAAAATTCTTCAAGATGCTTATGCTTCCCTATTTGAAGGCTTTGCATCAATTRYGAGGACCCAGGCAGGGCAATCTAGAGAAGAAAATGAAAACATTGTAAAAAAGGCTTTGAAATTGCAGGATAAATCTGAATGTCATTCCAGAAATAATTTGACAAATATTGATCAAAAGACCAAGAGAGATGCCGATCATGGGTCTGAGAAGAGCAAAAAATGTAAGGGAATTCAGGATAGTTTTGGAGTGAGCTCTGATTCTAGAGACGAAAGGGTAGATTCGGAGCATAGAAGAAATGATGGGAGCATGAATAAGGCATGGGGATCATGGGCACAAGCTCTTCATCAAATGGCTATGCATCCTGAGAAGCATAAAAATGACTTGCTTGAGATTTCAGAGGATGTTGTTGTTCTGAATGATCTCTATCCTAAGGCAAAGAAACATGTTCTCATTTTGTCTCGTACCCGAGGAGTTGATTGCCTGGAAGATGTCCAGAAAGAACACWTTCAGTTGCTGAAGAAGATGCATGATGTGGGTTTAAAGTGGGCCAGGAAGYTCCTAGATGAGAATGCTTCACTGGTCTTTCGCCTTGGATATCACTCAGCTCCGTCAATGCGACAACTGCATTTACATGTTATCAGCCAGGACTTTGATTCAAAACATWTGAAGAACAAGAAGCACTGGAACTCATTCAACACTGCTTTCTTTCGCGACTCGATAGACGTAATGGAYGAGGTCTCTAGTCAYGGGAAAGCAACACTGAAAGATGATGATAAGCTGTTGTCCATGGAGTTGAGGTGCCACAGATGTAGAAGTGCGCATCCAAACATACCCCGGTTGAAATCGCATATTGGCAGCTGCAAAGCTCCTTTTCCTGCTTACTTACTTGAAAATGGACGTCTGGTACATGCACCTGCTGAACCCTAA	1977	0.4173	MCMHVLCCIYLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGYSRITFCQSESDVKGAIXTYGSLGPLDNLPXGCFGQKNPDSKVQVGIMKFLKKVPAPDAAARPDGSGDTTSQNPGKNDYFHKDVEMASPILDNPNLESKEGESQXVAFDGSHASRXSLDDAPTLAFPSISTSDFQFNYEKAADIIVEKVAEFTAKLGNARLVLVDLTHKSKILSLVKAKASEKHIDTQKFLTHVGDITKLHSTGGLNCNVIXNAANWRLKPGGGGVNAAIFNAAGPELESATKERAKSLSPGNAVVVPLPASSPLFVTEGVTHVIHVLGPNMNPQRPNCLNNDYEKGCKILQDAYASLFEGFASIXRTQAGQSREENENIVKKALKLQDKSECHSRNNLTNIDQKTKRDADHGSEKSKKCKGIQDSFGVSSDSRDERVDSEHRRNDGSMNKAWGSWAQALHQMAMHPEKHKNDLLEISEDVVVLNDLYPKAKKHVLILSRTRGVDCLEDVQKEHXQLLKKMHDVGLKWARKXLDENASLVFRLGYHSAPSMRQLHLHVISQDFDSKHXKNKKHWNSFNTAFFRDSIDVMDEVSSHGKATLKDDDKLLSMELRCHRCRSAHPNIPRLKSHIGSCKAPFPAYLLENGRLVHAPAEP*	659

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo12g2327	658	MobiDBLite	consensus disorder prediction	434	450	-	-
	Amo12g2327	658	ProSiteProfiles	Macro domain profile.	231	414	IPR002589	-
	Amo12g2327	658	MobiDBLite	consensus disorder prediction	111	168	-	-
	Amo12g2327	658	ProSitePatterns	HIT domain signature.	546	564	IPR019808	-
	Amo12g2327	658	MobiDBLite	consensus disorder prediction	399	450	-	-
	Amo12g2327	658	MobiDBLite	consensus disorder prediction	405	426	-	-
	Amo12g2327	658	Pfam	Macro domain	267	344	IPR002589	-
	Amo12g2327	658	SMART	YBR022w_8	243	385	IPR002589	-
	Amo12g2327	658	PANTHER	APRATAXIN-RELATED	10	656	-	-
	Amo12g2327	658	Pfam	Scavenger mRNA decapping enzyme C-term binding	470	577	-	-
	Amo12g2327	658	SUPERFAMILY	Macro domain-like	170	222	IPR043472	-
	Amo12g2327	658	Pfam	C2HE / C2H2 / C2HC zinc-binding finger	582	634	IPR032566	-
	Amo12g2327	658	SUPERFAMILY	HIT-like	462	621	IPR036265	-
	Amo12g2327	658	Gene3D	Leucine Aminopeptidase, subunit E, domain 1	219	370	IPR043472	-
	Amo12g2327	658	Gene3D	-	459	639	IPR036265	-
	Amo12g2327	658	SUPERFAMILY	Macro domain-like	225	364	IPR043472	-
	Amo12g2327	658	PANTHER	APRATAXIN	10	656	IPR026963	GO:0003677\|GO:0006281\|GO:0033699

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo12g2327	9	652	C2H2 Transcription Factor Family	AT5G01310	57.764	0.0	731

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo12g2327	K10863		-	gmx:100786762	980.704

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo12g2327	12	104556074	104560689	Amo12g2327	12	104556074	104560689	ECH